Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20190 365 / 1e-128 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT4G01630 316 / 2e-109 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT1G69530 300 / 8e-103 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G37640 297 / 5e-102 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G39700 293 / 1e-100 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G40610 291 / 1e-99 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT2G03090 289 / 1e-98 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT3G55500 288 / 2e-98 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G05290 287 / 5e-98 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT5G02260 287 / 7e-98 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034548 [exp] 454 / 1e-163 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10017256 [exp] 389 / 3e-138 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10007205 [exp] 306 / 2e-105 AT4G01630 400 / 2e-142 EXPANSIN 17, expansin A17 (.1) Lus10009253 [exp] 306 / 2e-105 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10038013 [exp] 305 / 3e-105 AT4G01630 405 / 1e-144 EXPANSIN 17, expansin A17 (.1) Lus10034227 [exp] 298 / 3e-102 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10016533 [exp] 295 / 8e-101 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040801 [exp] 295 / 8e-101 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10037164 [exp] 291 / 1e-99 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244100 [exp] 402 / 3e-143 AT1G20190 404 / 3e-144 EXPANSIN 11, expansin 11 (.1) Potri.002G017900 [exp] 398 / 9e-142 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1) Potri.002G184700 [exp] 317 / 8e-110 AT4G01630 394 / 4e-140 EXPANSIN 17, expansin A17 (.1) Potri.016G135200 [exp] 311 / 1e-107 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 310 / 4e-107 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.019G057500 [exp] 306 / 1e-105 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.001G001100 [exp] 296 / 1e-101 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.001G240900 [exp] 293 / 2e-100 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.010G167200 [exp] 292 / 1e-99 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G057100 [exp] 289 / 1e-98 AT2G39700 459 / 6e-166 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10021845 pacid=23159342 polypeptide=Lus10021845 locus=Lus10021845.g ID=Lus10021845.BGIv1.0 annot-version=v1.0 ATGGCTCTACCATTAGCCTTCCAATGGGCAGCACCACTACTACTCTCCTTGTTCTTTCTCATTCCCAGTAATGTTGTTATCGCATTTGCTCCTTCTGCTT GGACCAAAGGCCACGCCACTTTCTATGGCGGCAGTGACGCTTCTGGAACCATGGGTGGGGCTTGCGGGTATGGTAACTTGTACTCGACCGGGTACGGGAC ACGAACGGCTGCGTTGAGCACTGCTCTGTTCAATGATGGGGCATCCTGCGGGGAGTGTTACAAGATCATCTGTGACTTCAAAACGGATCCTAGGTGGTGC ATTAGGGGCAAGTCCATCAAGATCACCGCCACGAATTTTTGTCCTCCAAATTTTGCTCAGCCGAACGACGATGGAGGATGGTGCAACCCACCCTTGAAGC ACTTCGACATGGCTCAGCCAGCCTGGGAGAAGATTGGTATATACAGAGGCGGAATCATTCCTGTCCTGTACCAGAGGGTGCCATGTAAGAAGCACGGTGG AGTTAGGTTCACAATCAACGGAAGAGACTACTTTGAGTTGGTGATGATTAGCAATGTTGGTGGAGCTGGATCTATTAAATCGGTATCGATCAAGGGTTCG AAGACAGGGTGGTTGACCATGTCAAGGAATTGGGGATCGAATTGGCAATCGAATTCGTACCTCGACGGTCAGTCTCTTTCGTTCCAAGTGACAACCACTG ACGGGGAAATGAGAACTTTCAACAACATTGCGCCGGCTAACTGGAGATTCGGGCAAACTTTCTCTAGTCCAGTACAGTTCTGA
AA sequence Show only first row Show all	>Lus10021845 pacid=23159342 polypeptide=Lus10021845 locus=Lus10021845.g ID=Lus10021845.BGIv1.0 annot-version=v1.0 MALPLAFQWAAPLLLSLFFLIPSNVVIAFAPSAWTKGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIICDFKTDPRWC IRGKSIKITATNFCPPNFAQPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCKKHGGVRFTINGRDYFELVMISNVGGAGSIKSVSIKGS KTGWLTMSRNWGSNWQSNSYLDGQSLSFQVTTTDGEMRTFNNIAPANWRFGQTFSSPVQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	1.0	0.9951
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	1.4	0.9737
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	2.6	0.9625
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	3.0	0.9702
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	3.5	0.9682
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	4.0	0.9625
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	4.2	0.9602
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	4.5	0.9593
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	4.5	0.9653
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	4.7	0.9579

Compare expression of checked genes

Lus10021845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.