Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24260 202 / 4e-62 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 178 / 3e-53 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 166 / 2e-48 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G02590 128 / 7e-35 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 129 / 8e-35 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G18300 72 / 9e-14 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 71 / 3e-13 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 71 / 4e-13 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36540 70 / 4e-13 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT5G50915 69 / 5e-13 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036286 [exp] 255 / 4e-83 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10015909 [exp] 141 / 9e-39 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 136 / 1e-38 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 140 / 8e-38 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 137 / 1e-37 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 134 / 2e-36 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 125 / 4e-33 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10023562 [exp] 72 / 6e-14 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 72 / 6e-14 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109500 [exp] 263 / 2e-84 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 260 / 4e-83 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.005G053500 [exp] 137 / 2e-37 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 137 / 4e-37 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G217800 [exp] 135 / 6e-37 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 134 / 1e-36 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.006G135600 [exp] 133 / 8e-35 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.005G121850 [exp] 73 / 4e-14 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 72 / 1e-13 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.014G148900 [exp] 71 / 3e-13 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021846 pacid=23157979 polypeptide=Lus10021846 locus=Lus10021846.g ID=Lus10021846.BGIv1.0 annot-version=v1.0 ATGCAGCCTTGCAGCAGAGAAATGGCCGCCGGCCTCAACTCCTTGCTTAACGACCTTCACCACTTCGACCCTTCATCCGCCGCCTCGGCCGACGACTTCC TCGACCAGTTAATGCTCTCAGCCATCCCTCCCTCCAACGCCGGCGCCTCCTGGGTCACAGGTGCCGACCTCGTCAAGTCCCCCTGGGCCGACCTCGCTTC CGACGACGACACCCTAAACCATAATGTCTCCGGATTTTTCGAGGACTCCGCCACCGTGAATCTGGCATCGAAGCTCCGGCACCACCAGATCAACGGTGAT GGGAATTCTGTTCACGCGCTGTTTAACGGCTTCTCCGCCGGATCGATTCATCCTACAACCGTCGCCTTATCTGAACCGCATTTCAATCTCCCTCCCTCTC AGGGAGGGATGCAATCAGGTGGACAGAGCTTCGTGGCCGGAGCTCAGACGGGAGCGGGAGGTGGAGTGAAGCAAGGTCAAACTCAGGGTAGCGGGTCAAC GGCGGGGGAGGCGCGGGTGAGGGCTAGGAGAGGGCAAGCTACTGATCCACACAGTATAGCTGAAAGGTTACGGAGGGAAAGAATTGCAGAGAGAATGAAG TCGTTGCAGGAACTGGTCCCCAATGCCAACAAGACGGACAAGGCTTCGATGCTGGATGAGATAATCGACTATGTCAAATTCCTCCAGCTCCAAGTCAAGG TTCTGAGCATGAGCCGGCTGGGCGGTGCTGCGGCCGTCGCACCTCTGGTCGCCGACATATCATCCGAGGGAGGCGGAGGTGGAGGCGGCGACTGTATCCA AACGACCAGCACCGCGGCCGGAGCCAATGGCGGCGGCGCATCAAACGACAACAGTCTGACAATGACGGAGCACCAGGTGGCGAAGCTAATGGAAGAGGAC ATGGGATCTGCCATGCAGTACTTGCAAGGGAAAGGCCTCTGCTTAATGCCCATCTCACTCGCCACCGCCATCTCCACCGCCACTTGTAGCAATCACCGTC AGCCTTCCTCTCCCAACGTGTCGGTCCTGACGATGCAATCGGCTACGGTGGGTAATGGCGCCGCCGGAGGTGACGTGAAGGACGTCTCTGCTCCGTGA
AA sequence Show only first row Show all	>Lus10021846 pacid=23157979 polypeptide=Lus10021846 locus=Lus10021846.g ID=Lus10021846.BGIv1.0 annot-version=v1.0 MQPCSREMAAGLNSLLNDLHHFDPSSAASADDFLDQLMLSAIPPSNAGASWVTGADLVKSPWADLASDDDTLNHNVSGFFEDSATVNLASKLRHHQINGD GNSVHALFNGFSAGSIHPTTVALSEPHFNLPPSQGGMQSGGQSFVAGAQTGAGGGVKQGQTQGSGSTAGEARVRARRGQATDPHSIAERLRRERIAERMK SLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGGGGGDCIQTTSTAAGANGGGASNDNSLTMTEHQVAKLMEED MGSAMQYLQGKGLCLMPISLATAISTATCSNHRQPSSPNVSVLTMQSATVGNGAAGGDVKDVSAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	0	1
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	2.0	0.9441
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	3.3	0.9469
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	5.3	0.9451
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	5.5	0.9409
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	6.3	0.9413
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	6.7	0.9450
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	9.0	0.9375
AT1G03270			CBS domain-containing protein ...		Lus10012375 [exp]	9.3	0.9053
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	10.8	0.9310
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	11.7	0.9389

Compare expression of checked genes

Lus10021846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.