Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50680 107 / 2e-27 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G51120 105 / 1e-26 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G13260 57 / 2e-09 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 56 / 4e-09 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G25560 53 / 3e-08 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G68840 46 / 6e-06 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT4G23750 41 / 0.0004 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036282 [exp] 204 / 4e-65 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10035059 [exp] 66 / 2e-12 AT1G13260 250 / 2e-96 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021707 [exp] 57 / 1e-09 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10041487 [exp] 47 / 4e-06 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10014345 [exp] 41 / 0.0003 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186301 [exp] 146 / 2e-42 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 145 / 5e-42 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 115 / 2e-30 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 53 / 3e-08 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.010G129200 [exp] 48 / 2e-06 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021848 pacid=23157991 polypeptide=Lus10021848 locus=Lus10021848.g ID=Lus10021848.BGIv1.0 annot-version=v1.0 ATGAAGGAATACTATCCTTGCAGGGTGAAGCCGTTGCCGGAGCGTTCATCTTTGACGATTCGAATGGTATACTGCCGTGATGATCCGTTAGTCCGCCTGT ATTTCCGCCATATCTTCATCTTCGCCCAACACCTCCGTGGAGATGGCCCTTGCCTCATTAAAAAGGCACATTGCATAGGTGAACCAATCGAGGGTGATGG TGGTGTTTTGGCCTTGGCCCTCGTCAGCATGGAGGATGTGGCTGGGACCTTCAAATCCGAGAAGGAGGTAGCAATGGCTTACGATAGTGCTGCTTTGAAG CTTCGAAACAGCGGAGACACTCGTAGGAACTTCCCTGTCACGCCCACCACCAGCCCAGAGCCAAAGTTCCAGTGTAACTACAGCATGGAAGCTGTCCTGA ACATGATAAAGGACAGCACTTACCAATCAAGGTTTGTGGAATTCATCGCTCAGACAGTCGGGACCGACCTCAGCCTCAACATTCTGAGCCCAAGAACCGA TAATGGGGGCCTGTTATGCAAGATGTTGTTCCACAAAGAGCTTACCCCGAGCCACGTCAGCAAGCTGAACAGACTTGTCATCCCGAATTTGGGAGAAGTG CTACAAGGTGAAATTGTTGTCGAACAGGAATCGGTGCAGGTTGAGCTGGCTAGAAAGCGCAATGATGTATAA
AA sequence Show only first row Show all	>Lus10021848 pacid=23157991 polypeptide=Lus10021848 locus=Lus10021848.g ID=Lus10021848.BGIv1.0 annot-version=v1.0 MKEYYPCRVKPLPERSSLTIRMVYCRDDPLVRLYFRHIFIFAQHLRGDGPCLIKKAHCIGEPIEGDGGVLALALVSMEDVAGTFKSEKEVAMAYDSAALK LRNSGDTRRNFPVTPTTSPEPKFQCNYSMEAVLNMIKDSTYQSRFVEFIAQTVGTDLSLNILSPRTDNGGLLCKMLFHKELTPSHVSKLNRLVIPNLGEV LQGEIVVEQESVQVELARKRNDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	0	1
AT1G20180			Protein of unknown function (D...		Lus10017348 [exp]	1.0	0.8613
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	3.9	0.8414
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10021221 [exp]	4.7	0.8002
AT1G56420			unknown protein		Lus10031412 [exp]	6.0	0.7932
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10015986 [exp]	6.1	0.7905
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	6.8	0.7998
					Lus10019815 [exp]	7.0	0.8355
AT1G60590			Pectin lyase-like superfamily ...		Lus10029140 [exp]	11.9	0.7793
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	14.5	0.7694
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	14.8	0.8101

Compare expression of checked genes

Lus10021848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.