Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23160 137 / 4e-34 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) ATMG00820 0 / 1 ATMG00820.1, ORF170 Reverse transcriptase (RNA-dependent DNA polymerase) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027499 [exp] 149 / 1e-38 AT4G14147 254 / 2e-81 protein binding (.1.2) Lus10015963 [exp] 85 / 2e-19 ND / Lus10007672 [exp] 83 / 2e-18 ND / Lus10014644 [exp] 77 / 5e-17 ND / Lus10010773 [exp] 77 / 2e-16 ND / Lus10021851 [exp] 73 / 7e-14 ND / Lus10007673 [exp] 69 / 3e-12 AT4G32700 313 / 6e-94 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10017808 [exp] 65 / 7e-12 ND / Lus10024483 [exp] 62 / 8e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G007800 [exp] 122 / 4e-29 AT2G25440 227 / 1e-62 receptor like protein 20 (.1) Potri.007G090150 [exp] 46 / 3e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0027 [flax] [poplar] RdRP PF07727 [flax] [poplar] RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase)
Representative CDS sequence Show only first row Show all	>Lus10021849 pacid=23158066 polypeptide=Lus10021849 locus=Lus10021849.g ID=Lus10021849.BGIv1.0 annot-version=v1.0 ATGCGGGGATCAGAGACATCGACTCAACAACTGTCTGTGGTGGTTGATCAAGCCCAATCTGAGGTATCAGTTCAACAGAGTAACAGAGCTCCATCTGGGA GCGGGTTTAGAGGGAACCGAGATTTGGGTGAAAGAAATGATGGCATGGTCTCACAGATTGATCGTTCTGTGCTGCAACTTGCTGATATCATCCCAAACGC ACCAAATGAACCTGTATTGAGTCCTGCATCATCCAATCAACCACCGGACAGGAGCGACCATACTCCAGTTCGTGTTCAATCACAAGCTGCCTCACCTCTT AGTGGATCTGCTACAGCTAGCACACATACACCGTCTCCACCCTTGGCCGATTTACGACCACAAACCAGACTTCAACATGGTATTCAACGACCGAAGAAAA GGACAGATGGTACTATACCATATGGATATGGTTTTCTTTGTGCTACAGGTGAACCCAATAATTTGCAGGAAGCACTTGATGACACCAAGTGGAAAAATGC AATGGATGATGAATATGAGGCACTTATGAGAAACAAGACATGGCATTTGGTTCTTGCACCACATGGCAAGAACGTGATTGATTGTAAGTGGGTGTACAAA ATTAAACAAAAAGCAGATGGAACTGTTGATCGATACAAAGCACGGTTAGTTGCCAAGGGGTTCAAACAAAGGTATGGAATTGATTATGAAGACACCTTTA GCCCTGTTGTGAAAATTGCTACCATTCGACTCATTCTATCTATAGCTGTGTCTAGAGGATGGTGCCTGAGACAGTTAGATGTACAGAACGCGTTTTTGCA TGGTGTTCTGGAAGAGGAGTTGGAGAAATTGAGGAATCTAGCCACAAGACAATTGTGGGAAAGGAAAGCAAGTGTCGCTACCAACAAAGTGGCTCTTTTC GCTCAACATGCAACCTTAAAAGCAGAACAAACTGCAATGTTGGCTCAAGAAGCAGCACTACGTACAAAAATGAGAGAAACACAATACTTGGAGGAGCTTC AAGTCAAGGCAGTACATCAGCACAACCGTGCTAGATTCGTTTGTGCATTTGTTCAACAGAGAGACGGTCCAAGAGCATCAAAGGTTGACATGATTCTGCT CCCCCCTGGCAGTCGCTTTAGGTCAGAGGTGCTTGGTACAGGAGTCGGTGATGTAAGGAAGCTACGCAAAATTTGGACTGATCGTGATAATGTGTCATAC GTTGGTGACAAGGATTTCGAGCTTTGTGACCATATCTATTTCCCGGTACATGATGCTAGTCCTTGTGGTGACCAATACTACGTGTTCATCATCGATTTGA AGAATAAGAAAAAGATCTTGCTTAACAGCTTGGATGTTAGGAAGAGCTGTGAGAGCAACCCCATCTATCATGCAACCTTCAAAAAGGTGATTGAGTACGT GGAGTTGTTTTTAAGGGGAATGAAATGCAAGGACATGACTCAGTTCAAATAG
AA sequence Show only first row Show all	>Lus10021849 pacid=23158066 polypeptide=Lus10021849 locus=Lus10021849.g ID=Lus10021849.BGIv1.0 annot-version=v1.0 MRGSETSTQQLSVVVDQAQSEVSVQQSNRAPSGSGFRGNRDLGERNDGMVSQIDRSVLQLADIIPNAPNEPVLSPASSNQPPDRSDHTPVRVQSQAASPL SGSATASTHTPSPPLADLRPQTRLQHGIQRPKKRTDGTIPYGYGFLCATGEPNNLQEALDDTKWKNAMDDEYEALMRNKTWHLVLAPHGKNVIDCKWVYK IKQKADGTVDRYKARLVAKGFKQRYGIDYEDTFSPVVKIATIRLILSIAVSRGWCLRQLDVQNAFLHGVLEEELEKLRNLATRQLWERKASVATNKVALF AQHATLKAEQTAMLAQEAALRTKMRETQYLEELQVKAVHQHNRARFVCAFVQQRDGPRASKVDMILLPPGSRFRSEVLGTGVGDVRKLRKIWTDRDNVSY VGDKDFELCDHIYFPVHDASPCGDQYYVFIIDLKNKKKILLNSLDVRKSCESNPIYHATFKKVIEYVELFLRGMKCKDMTQFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10021849 [exp]	0	1
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Lus10010243 [exp]	4.1	0.7964
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10016377 [exp]	4.2	0.7165
AT2G15220			Plant basic secretory protein ...		Lus10026576 [exp]	14.4	0.7007
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	16.0	0.6392
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	16.6	0.6121
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10018119 [exp]	18.4	0.5748
					Lus10013260 [exp]	22.2	0.6073
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	24.0	0.6073
					Lus10005297 [exp]	25.6	0.6073
					Lus10006529 [exp]	27.2	0.6073

Compare expression of checked genes

Lus10021849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.