Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007672 [exp] 164 / 3e-50 ND / Lus10010773 [exp] 153 / 3e-46 ND / Lus10015963 [exp] 127 / 2e-36 ND / Lus10014644 [exp] 111 / 1e-30 ND / Lus10003636 [exp] 104 / 4e-26 ND / Lus10017780 [exp] 92 / 3e-23 ND / Lus10007673 [exp] 97 / 2e-22 AT4G32700 313 / 6e-94 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10021849 [exp] 88 / 3e-19 AT4G23160 138 / 1e-34 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10018809 [exp] 78 / 1e-17 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10021851 pacid=23158037 polypeptide=Lus10021851 locus=Lus10021851.g ID=Lus10021851.BGIv1.0 annot-version=v1.0 ATGGAAGGAAGATTGAGTACAAGGGCACTCGATTTGAAGAATCTGTCTCCGACGGGCAAACAACTTTTTGGTGGTCAAGAACTCGAGTGGCAAGAGAAAT TGAGGAATCTAGCCACAATACAATTGCAGGAAAGGAATGCAAGTGTCGCTACCAACAAAGTGGCTCTTTCTGCTCAACAGGCAGCCTTAAAAGCACAACA AACAGCGGTATTAAGAAGTAGCATTTCAGACATAAATGAGGGAAGTACAGTACTTGGAAGGGGAGATGACATACATCAAGAACGTGATATCAACGCACTT TGCAAGTACAAGCAAAGGGAACGAGAAGCTAAAGACGAAGTCGATACATCAACAATGAGCAAAACGAAGCAGTGTAATACCGATAGCAATGTTGGCAGAC AGAAAACGCATGAAGCCAATGATGGAGAAGTTATAGTCAACGACAATGACAAAGGAGGAAACGGCAGCACAAGACAAAACCAGAAAGAGAATGTTTCGGT TATTAAAAATGAAAATAACAGAAAAAGTGTTATTGGAGAAGGGGGAAACAAGATAGTAGGAGAAGGCGGAAAGGGGGATGACCATTTCTTCAATAAGGAA AAGATCTTGCTTACCAGCTTGGACGTTAGGAAGAGTTATAAGAGCAACCCCATTTATCATGCAACCTTTAAGAAGCTGATTGAGTACGTAGAGCCGTTTT TAAGGGGAATGAAATGCAAGGACATTAATCAGTTCAAATGGAGGGTGTGTGATGCTCCTCGTCAACCCGACAACCATAGTTGTGGGTTGTTCATGATATA CTTCATGGAGCACTACGCTGGTGGTTTCACACCGGAGAAAAGGGGGCAATGGAATCAAATGAAGTTCTTGAAGAAGATAGAGTATACTAGGCTTATCGCT TGA
AA sequence Show only first row Show all	>Lus10021851 pacid=23158037 polypeptide=Lus10021851 locus=Lus10021851.g ID=Lus10021851.BGIv1.0 annot-version=v1.0 MEGRLSTRALDLKNLSPTGKQLFGGQELEWQEKLRNLATIQLQERNASVATNKVALSAQQAALKAQQTAVLRSSISDINEGSTVLGRGDDIHQERDINAL CKYKQREREAKDEVDTSTMSKTKQCNTDSNVGRQKTHEANDGEVIVNDNDKGGNGSTRQNQKENVSVIKNENNRKSVIGEGGNKIVGEGGKGDDHFFNKE KILLTSLDVRKSYKSNPIYHATFKKLIEYVEPFLRGMKCKDINQFKWRVCDAPRQPDNHSCGLFMIYFMEHYAGGFTPEKRGQWNQMKFLKKIEYTRLIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021851 [exp]	0	1
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	1.0	1.0000
					Lus10008791 [exp]	1.4	1.0000
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	2.0	0.9932
					Lus10020451 [exp]	2.6	0.9919
					Lus10012440 [exp]	3.0	1.0000
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	3.5	0.9688
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	3.6	0.9596
					Lus10026713 [exp]	3.9	0.9925
AT3G44160			Outer membrane OMP85 family pr...		Lus10004104 [exp]	3.9	0.9584
					Lus10031183 [exp]	4.2	0.9925

Compare expression of checked genes

Lus10021851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.