Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30960 648 / 0 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45820 511 / 1e-180 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G18700 491 / 4e-172 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G58380 485 / 9e-170 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G45810 476 / 3e-166 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G30270 469 / 2e-163 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G29230 468 / 1e-162 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT5G25110 459 / 2e-159 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G01140 457 / 2e-159 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G10930 452 / 2e-157 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036280 [exp] 803 / 0 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007283 [exp] 497 / 6e-175 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10022749 [exp] 491 / 2e-172 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 486 / 3e-170 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10024448 [exp] 481 / 2e-168 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10014163 [exp] 480 / 5e-168 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 476 / 1e-166 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 473 / 2e-165 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10007448 [exp] 471 / 1e-164 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186200 [exp] 736 / 0 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 731 / 0 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 512 / 2e-180 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 505 / 4e-178 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.013G156000 [exp] 500 / 3e-176 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 499 / 6e-176 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 488 / 2e-171 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 482 / 4e-169 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G062800 [exp] 478 / 2e-167 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.011G067600 [exp] 471 / 4e-163 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021852 pacid=23157981 polypeptide=Lus10021852 locus=Lus10021852.g ID=Lus10021852.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAGAGCAGAGATGGTCAGACTACTCTGCTTCACGGGAAATACGAGCTCGGTAGGCAGTTAGGCCACGGAACATTCGCGAAGGTGTACCACG CTCGGAACCTCAAGTCCGGCATGAGTGTGGCGATGAAGGTCGTAGGAAAAGAGAAGGTGATTAAAGTCGGGATGATGGAGCAGATCCAGCGCGAGATTTC GGTGATGAAGATGGTGAAGCATCCAAACATCGTCGAACTCCACGAGGTGATGGCGAGTAAATCCAAGATTTACATCGCGATGGAGCTCGTCCGCGGCGGG GAGTTATTCAACAAGGTTGCCAAAGGTCGCCTGAAGGAGGACGTTGCCAGAGTCTACTTCCAGCAGCTGATCTCCGCCATCGATTTCTGCCACAGCCGAG GCGTCTACCACCGGGATCTGAAGCCGGAGAATCTACTCCTGGATGAGGAAGGCAACCTGAAGGTAACCGATTTTGGACTCAGTGCCTTCGCCGAGCATCT GAAACAAGACGGACTCCTCCACACCACATGCGGCACTCCGGCGTACGTAGCGCCCGAGGTAATCGGAAAGAAAGGATACGACGGAGCGAAAGCCGACCTC TGGTCCTGCGGAGTCATCCTCTTTGTCCTGCTGGCCGGGTTCTTACCTTTCCAGGACGATAATCTAGTAGCTATGTACCGAAAAATCTACAGAGGCGACT TTAAATGTCCGCCGTGGTTATCGTCAGAAGCTCGGAGGCTAATCACAAAGCTGCTGGATCCGAATCCGGCATCGAGAATTACAATCTCCAAAGTTATGGA TTCGTCCTGGTTCAAGAAATCCATCCCGAAGAAGGTGAGATCTAAAGAGGAGATGGAATTCGACACGTTCAACACGGAAGAAGAATCAAAATCTGAGAAA TACAAGCAGCCGAAGACTCTGAACGCGTTCCACATAATCTCGCTATCAGAAGGCTTCGATCTGTCGCCTCTGTTTGAAGAGAAGAAGAGGATGGAGAAGG AAGAGCTGAGATTCGCCACAACTCGGCCAGCGAGCAGCGTGATATCGAAACTGGAGGAAGTGGCGAAAGCAGGGAAATTCAGTATAAAGAGAAGCGAGAC GAAGGTAAAGCTGCAAGGGATGGAGAGTGGGAGGAAAGGGAAGCTTGGGATTCAGGCGGAGATATTTGCAGTGACTCAGTCGTTCTTGGTTGTGGAGGTG AAGAAGGATAATGGGGATACGCTAGAGTATAACCAGTTCTGTAGCAAAGAGCTTAGACCGGCGCTTAAGGACATCGTGTGGACATCGCCGGCGGACGTGG TTGCTTGA
AA sequence Show only first row Show all	>Lus10021852 pacid=23157981 polypeptide=Lus10021852 locus=Lus10021852.g ID=Lus10021852.BGIv1.0 annot-version=v1.0 MAEKSRDGQTTLLHGKYELGRQLGHGTFAKVYHARNLKSGMSVAMKVVGKEKVIKVGMMEQIQREISVMKMVKHPNIVELHEVMASKSKIYIAMELVRGG ELFNKVAKGRLKEDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSAFAEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADL WSCGVILFVLLAGFLPFQDDNLVAMYRKIYRGDFKCPPWLSSEARRLITKLLDPNPASRITISKVMDSSWFKKSIPKKVRSKEEMEFDTFNTEEESKSEK YKQPKTLNAFHIISLSEGFDLSPLFEEKKRMEKEELRFATTRPASSVISKLEEVAKAGKFSIKRSETKVKLQGMESGRKGKLGIQAEIFAVTQSFLVVEV KKDNGDTLEYNQFCSKELRPALKDIVWTSPADVVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	0	1
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	2.0	0.8533
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	2.0	0.8762
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	3.2	0.8698
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	4.2	0.7924
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	5.9	0.8256
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	6.5	0.8284
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000404 [exp]	7.1	0.7933
AT1G67570			Protein of unknown function (D...		Lus10043011 [exp]	7.4	0.8388
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	8.5	0.8180
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	13.5	0.7834

Compare expression of checked genes

Lus10021852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.