Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58003 155 / 6e-45 CPL4 C-terminal domain phosphatase-like 4 (.1) AT5G54210 94 / 8e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 89 / 5e-21 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 88 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G04930 86 / 8e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 84 / 7e-19 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 83 / 1e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 76 / 3e-16 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 75 / 3e-16 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G33540 76 / 1e-15 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036277 [exp] 274 / 4e-90 AT5G58003 474 / 4e-165 C-terminal domain phosphatase-like 4 (.1) Lus10036689 [exp] 253 / 6e-82 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10037233 [exp] 244 / 7e-79 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10036271 [exp] 81 / 3e-17 AT2G33540 874 / 0.0 C-terminal domain phosphatase-like 3 (.1) Lus10015787 [exp] 41 / 0.0004 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108300 [exp] 206 / 3e-64 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1) Potri.001G065600 [exp] 78 / 2e-16 AT2G33540 919 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.003G164300 [exp] 76 / 2e-15 AT2G33540 905 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.003G173700 [exp] 46 / 9e-06 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 44 / 5e-05 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 42 / 0.0003 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 42 / 0.0003 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10021854 pacid=23158071 polypeptide=Lus10021854 locus=Lus10021854.g ID=Lus10021854.BGIv1.0 annot-version=v1.0 ATGAGTCTTGTCTCTGATTCTCCTGTGAATTCGTCTATTAGTGGTGATTTTGCTGCTTTCCTCGATGGACATCTTGACTCCAAATCTTCGGATGATGCCG ATGAAGATGATGACGAGGGAGTAAAAAATGGTTCTGCTTCTAGCTTTTCTGACTCATCCAGTGAGGAAGAATCTGAATTGAAGAGGATAATCAACTTAAT CGGGAATGACGAAGTAAAAAGACAACGGCATATTGAGACGACGAGCTTATTGGGCCATAAAAAGCTATACCTCATACTTGATCTGGATCATACCTTGCTA AACTCTACTCTTCTTGGGCATATGGTGCCAGAAGAAGAGTATCTAAATGATCGTCTGGATTCCATGCAAGTTGCTCGAAATGGAAGCGTATACAAGTTGA ACTCCATGTGTCTGATGACCAAGCTGAGGCCCTATGTGCGTTCATTTCTGAAGGATGCTAGTCAAATGTTAGATATGTATATATATACCATGGGCGACAA AGCTTATGCACTGGAAATGGCCAATTTGCTTGATCCTGGAAAAGAGTACTTCGATGCGAAAGTTATTTCTCGTGATGATGGTACTCAGAGACACCAGAAG GGTCTTGATGTGGTGCTAGGAGAAGAGAGTGCGGTTGTCATCCTTGACGATACTGAAAATTTGAGTAAGTTATGCGTGCCAAATAACTGA
AA sequence Show only first row Show all	>Lus10021854 pacid=23158071 polypeptide=Lus10021854 locus=Lus10021854.g ID=Lus10021854.BGIv1.0 annot-version=v1.0 MSLVSDSPVNSSISGDFAAFLDGHLDSKSSDDADEDDDEGVKNGSASSFSDSSSEEESELKRIINLIGNDEVKRQRHIETTSLLGHKKLYLILDLDHTLL NSTLLGHMVPEEEYLNDRLDSMQVARNGSVYKLNSMCLMTKLRPYVRSFLKDASQMLDMYIYTMGDKAYALEMANLLDPGKEYFDAKVISRDDGTQRHQK GLDVVLGEESAVVILDDTENLSKLCVPNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	0	1
AT5G27230			Frigida-like protein (.1)		Lus10006522 [exp]	2.4	0.9026
AT3G07610		IBM1	increase in bonsai methylation...		Lus10025380 [exp]	3.7	0.8914
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10030134 [exp]	4.4	0.9164
AT2G38510			MATE efflux family protein (.1...		Lus10025156 [exp]	7.3	0.8799
AT4G10790			UBX domain-containing protein ...		Lus10039951 [exp]	8.9	0.9127
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10013799 [exp]	8.9	0.8968
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	13.6	0.8593
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	14.4	0.9019
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10022570 [exp]	16.1	0.8098
					Lus10003893 [exp]	18.0	0.8960

Compare expression of checked genes

Lus10021854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.