Plant FIBer expression Database

Lus10021855 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24240 664 / 0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
AT4G30940 635 / 0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
AT5G41330 75 / 2e-14 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
AT3G09030 74 / 7e-14 BTB/POZ domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036274
[exp]
799 / 0 AT2G24240 740 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Lus10017502
[exp]
66 / 2e-11 AT5G41330 546 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Lus10028780
[exp]
64 / 7e-11 AT5G41330 544 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Lus10024643
[exp]
61 / 8e-10 AT5G41330 580 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Lus10032277
[exp]
60 / 2e-09 AT5G41330 574 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G185300
[exp]
678 / 0 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Potri.018G107600
[exp]
674 / 0 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Potri.016G112900
[exp]
67 / 6e-12 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1)
Potri.001G102300
[exp]
67 / 7e-12 AT5G41330 568 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
Potri.003G129300
[exp]
60 / 2e-09 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0033 POZ PF02214 BTB_2 BTB/POZ domain
Representative CDS sequence
>Lus10021855 pacid=23158012 polypeptide=Lus10021855 locus=Lus10021855.g ID=Lus10021855.BGIv1.0 annot-version=v1.0
ATGATAGTGGCCAAGGACAGAGTGAAATTCAACGTCGGGGGAAGGATCTTCGAGACAACCGCTACCACTTTAGCCAACGCCGGAAGGGACTCGTTCTTCG
GCCCTCTCTTCGACGACAACTGGAACTTCAAACCACCGCCACCGGCCGAATTCTTCACCGATCGGAACCCTGACTGCTTCGCCGTCCTCCTCGATCTCCT
CCGCACCGGCGATCTAAACCTCCCCGCGAACCTTCCGGAGCGTCTCCTCCACCGAGAGGCTTCGTTCTACGGTGTTCTTGACCACGTCCGGTCGGCCAAG
TGGGGACCCTTCGACGGGAATCGCCTTCGCCACTCGAAATCCGTCGCCGGTAGAGCCCCCGGCGATGGAACGGCGATCCGTGCTGGTCCCGACGGGGGAT
GTGCTGTAGCACACGGGAGTGTGGTACACGTCTACGATTGGATGATGGAGGAGCATCCGCCATTGTCCTTGGACTACCAGAGGGTCAACGACGTCGTTTG
GGTGGATTCCGATCACCTCGCGATTAGCGCCTGCGAGCGCCTGGGGCGAGGTGACGGCGGGTTGGGTCTTTATAATAAGACTTCGGGTGAATTGCAGTTC
AAGTTCCAAGTTAGTCACGAGAATCAAGTCAAGAACTTCACCGCCGGAGCTCTGAGTACAACGAATTCCGATTACAGAATCTTCAGTAGTTGTAAAGGGA
GGAGTAACGAGTATGGGATTGGAGTTTGGGATCAATGCACCGGTAAACAAATGGATTTCTTCTACGAATCACCAGGTTGGTCATTAGGCGATGCAGACAG
GCTGCAATGGATGAGAGAGAAAAATTGTCTATTAGTAGCAACATTGTTTCCCAGGAAGGACAATTGCTACATTAGCATGTTGGATTTTCGAAGCAAGGAT
ATGGTATGGAGTTGGTCGGACATGGGAGCTCCGTTAACGGTGGACGAAAAACGAGTTAGAGACGCTATAGCAATGGAAGGAGAAGGGAGGAACAACAATG
CGATATGTGTGGTGAATGAGTATGAAGATTTAGGGTTTATGGATTTGAGGATGAGTGGTGGAAGCATAAGGTGGAGTTCGAGGAGTAGGCTAATGAAAGG
AAGAATGCCTGATGATGAGTCTTGTTATCCTAAGTTGGCGTTACACGACGGTCAGTTATTTTCATCCATGAACGATTGTATTTCGGTATTTTGTGGTCCT
GACATGATCTTAACATCGAGACTTTGTCAGAGTTATGGTGGGTCGATTTGTGATTTTTCCATCGGAGGAGATCGATTGTTTGCTCTTCATAACGAGGAGA
ATGTGTTTGACGTTTGGGAATGTCCTCCGCCGCCAGTGATTTGA
AA sequence
>Lus10021855 pacid=23158012 polypeptide=Lus10021855 locus=Lus10021855.g ID=Lus10021855.BGIv1.0 annot-version=v1.0
MIVAKDRVKFNVGGRIFETTATTLANAGRDSFFGPLFDDNWNFKPPPPAEFFTDRNPDCFAVLLDLLRTGDLNLPANLPERLLHREASFYGVLDHVRSAK
WGPFDGNRLRHSKSVAGRAPGDGTAIRAGPDGGCAVAHGSVVHVYDWMMEEHPPLSLDYQRVNDVVWVDSDHLAISACERLGRGDGGLGLYNKTSGELQF
KFQVSHENQVKNFTAGALSTTNSDYRIFSSCKGRSNEYGIGVWDQCTGKQMDFFYESPGWSLGDADRLQWMREKNCLLVATLFPRKDNCYISMLDFRSKD
MVWSWSDMGAPLTVDEKRVRDAIAMEGEGRNNNAICVVNEYEDLGFMDLRMSGGSIRWSSRSRLMKGRMPDDESCYPKLALHDGQLFSSMNDCISVFCGP
DMILTSRLCQSYGGSICDFSIGGDRLFALHNEENVFDVWECPPPPVI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G24240 BTB/POZ domain with WD40/YVTN ... Lus10021855
[exp]
0 1
AT5G47070 Protein kinase superfamily pro... Lus10001088
[exp]
6.6 0.8422
AT2G23320 WRKY WRKY15 WRKY DNA-binding protein 15 (.... Lus10041600
[exp]
7.4 0.8117
Lus10039781
[exp]
10.9 0.8418
AT1G72470 ATEXO70D1 exocyst subunit exo70 family p... Lus10013163
[exp]
13.2 0.8247
AT3G05580 TOPP9 type one protein phosphatase 9... Lus10029882
[exp]
13.9 0.8179
AT5G42050 DCD (Development and Cell Deat... Lus10032412
[exp]
14.5 0.8257
AT1G01550 BPS1 BYPASS 1, Protein of unknown f... Lus10039581
[exp]
15.4 0.8288
AT1G77480 Eukaryotic aspartyl protease f... Lus10018146
[exp]
17.3 0.8256
AT5G18310 unknown protein Lus10042520
[exp]
18.3 0.8038
AT5G65520 Tetratricopeptide repeat (TPR)... Lus10012031
[exp]
21.8 0.7885

Lus10021855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.