Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 525 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 522 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 372 / 1e-124 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 369 / 8e-124 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 365 / 4e-122 SCPL41 serine carboxypeptidase-like 41 (.1) AT4G30610 344 / 5e-114 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G12480 331 / 3e-109 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT3G02110 330 / 1e-108 SCPL25 serine carboxypeptidase-like 25 (.1) AT1G61130 326 / 4e-107 SCPL32 serine carboxypeptidase-like 32 (.1) AT3G63470 327 / 6e-107 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010331 [exp] 944 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 895 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 820 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 784 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040326 [exp] 693 / 0 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023447 [exp] 691 / 0 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1) Lus10003302 [exp] 659 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 656 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10030315 [exp] 619 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036000 [exp] 630 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 628 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 622 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 578 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.006G036500 [exp] 570 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 524 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 524 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 520 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 495 / 2e-173 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 360 / 5e-120 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10021856 pacid=23157975 polypeptide=Lus10021856 locus=Lus10021856.g ID=Lus10021856.BGIv1.0 annot-version=v1.0 ATGGGCTCACAGTTATGGATTGTTATCTTCATTCTTTCTGCAGCTTTCACCTCCAAGTTCGGAACAGTCGAGTCGTCCCATGAGGTCGACAAGATTGCGA GGTTGCCGGGTCAGCCCCAGGTTAGCTTCAAACAGTATGCAGGGTATGTGACTGTTGATGAAATCCAGCAGAGGAAACTTTTCTACTACTTTGTTGAAGC TCAGACCAACTCTACTTCCAAGCCACTTGTTCTCTGGCTAAATGGAGGACCTGGTTGTTCTTCTGTTGGAGCGGGAGCTTTCTCCGAGCATGGCCCTTTC CAGCCAAATGCTGCTGGAGTTCTCGTCAACAACGACTACAGTTGGAATAAAGAAGCAAACATGCTGTACTTGGAATCTCCAGCAGGAGTTGGATTCTCTT ATTCAGCCAACACCTCTTTCTACAATTTAGTAAATGACACCATAACAGCAAAAGACAACTTGGTGTTCTTAGAACAGTGGCTACTTAAATTCCCTGAGTA TAAGACAAGAGATTTTTTCATCACTGGAGAGAGCTATGCTGGACACTATGTGCCACAACTAGCTCAACTAATTGTGGAGTCAAGAACAAATCTCAGCTTG AAAGGCATAGCTATAGGAAATCCATTGTTGGAGTTCAACACGGATACGAACGGGGAAGGGAGGTTCTACTGGTCACACGGATTGATTTCGGACTATACAT ATCACCTTGTGAACACAATCTGCAACACTTCCCAGCTGTGGAGGGAATCCGCTTCGGGCATCCTTTCTGAACAGTGTAACATTGTATCAGCACGCTTCGA TGAAGAAATTCCCAGCCACTCATTCGATTCTTATGATGTCACTTCTGATGTTTGCCTATCAGATGGTAAATCACAGCAGAAAGCTGGCAGACTTTCGCCT CTCAAGTCCAAGCAAGGCCGTCTCGGAAAGCTGAAAGCCGGAGGAGAGTCCATAAACCTTTGTGTACAAGACGAGACGGACGGGTATTTGAACAGGAAAG ATGTTCAGCAAGCTATGCATGCCCAGCTTGTTGGCGTTACGAGCTGGAGTTTCTGCAGCGATGTGATGAATTATGATAACAGCAACCTGGAGAACCCGAC AATTGGAGTGGTGGGATCACTGGTAAGTTCAGGAATCAAAGTACTGGTCTACAGCGGGGATCAGGACTCGGTGCTTCCATTCATCGGAACGAGGACTCTG GTGAATCGTCTGGCTAAAGGAATGGGAATGAACACAACAGTGCGATACAAGCCATGGTTCGACACTGACAAACAAGTCGGAGGATGGACACAAGTTTATG GAGAGAAGAAGGAGCTGGGATTTGCAACCATAAGAGGAGCATCTCACATGGCTCCATTCTCATCTCCGAAGAGGTCTCTGGCCCTATTTGCTGCATTTGT TGCTGGCAAACCATTGGCTGTTTGA
AA sequence Show only first row Show all	>Lus10021856 pacid=23157975 polypeptide=Lus10021856 locus=Lus10021856.g ID=Lus10021856.BGIv1.0 annot-version=v1.0 MGSQLWIVIFILSAAFTSKFGTVESSHEVDKIARLPGQPQVSFKQYAGYVTVDEIQQRKLFYYFVEAQTNSTSKPLVLWLNGGPGCSSVGAGAFSEHGPF QPNAAGVLVNNDYSWNKEANMLYLESPAGVGFSYSANTSFYNLVNDTITAKDNLVFLEQWLLKFPEYKTRDFFITGESYAGHYVPQLAQLIVESRTNLSL KGIAIGNPLLEFNTDTNGEGRFYWSHGLISDYTYHLVNTICNTSQLWRESASGILSEQCNIVSARFDEEIPSHSFDSYDVTSDVCLSDGKSQQKAGRLSP LKSKQGRLGKLKAGGESINLCVQDETDGYLNRKDVQQAMHAQLVGVTSWSFCSDVMNYDNSNLENPTIGVVGSLVSSGIKVLVYSGDQDSVLPFIGTRTL VNRLAKGMGMNTTVRYKPWFDTDKQVGGWTQVYGEKKELGFATIRGASHMAPFSSPKRSLALFAAFVAGKPLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10021856 [exp]	0	1
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	2.0	0.8798
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	2.8	0.8591
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	4.9	0.8622
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	6.9	0.8713
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	10.7	0.8506
AT5G06470			Glutaredoxin family protein (....		Lus10021255 [exp]	11.0	0.8361
AT1G50250		FTSH1	FTSH protease 1 (.1)		Lus10012277 [exp]	12.6	0.8560
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	14.1	0.8411
AT1G21070			Nucleotide-sugar transporter f...		Lus10035824 [exp]	15.5	0.8365
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	15.9	0.8436

Compare expression of checked genes

Lus10021856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.