Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46290 549 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G46280 535 / 0 TIF3I1, TRIP-1 TGF-beta receptor interacting protein 1 (.1.2.3) AT1G15470 143 / 4e-40 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15610 131 / 2e-35 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52730 130 / 4e-35 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 81 / 2e-16 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G25150 75 / 8e-15 TAF5 TBP-associated factor 5 (.1) AT4G02730 70 / 2e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 68 / 2e-12 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G11160 67 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010332 [exp] 669 / 0 AT2G46290 550 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10019450 [exp] 135 / 1e-36 AT3G15610 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043302 [exp] 119 / 7e-31 AT3G15610 502 / 2e-180 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 82 / 4e-17 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 81 / 2e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 76 / 9e-15 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10012230 [exp] 74 / 2e-14 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043473 [exp] 72 / 9e-14 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10002860 [exp] 70 / 2e-13 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100101 [exp] 608 / 0 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G141400 [exp] 608 / 0 AT2G46290 553 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G174600 [exp] 144 / 2e-40 AT1G52730 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G059500 [exp] 143 / 8e-40 AT1G52730 573 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 80 / 3e-16 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 74 / 2e-14 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.001G173500 [exp] 73 / 5e-14 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.005G144400 [exp] 72 / 7e-14 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 72 / 8e-14 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.003G060500 [exp] 71 / 2e-13 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10021857 pacid=23158026 polypeptide=Lus10021857 locus=Lus10021857.g ID=Lus10021857.BGIv1.0 annot-version=v1.0 ATGAGGCCTATTTTGATGAAAGGGCATGAAAGGCCCTTGACCTTTCTCAAGTACAATCGCGAAGGAGATCTGTTATTCTCCTGCGCCAAGGACCACGACC CCACCGTCTGGTTCGCTGACAACGGCGAGCGATTGGGCACCTACCGCGGCCACAACGGAGCCGTATGGTCCTGCGATGTCTCAAGAGATTCGATGACGCT AATCACTGCTAGCGCTGATCAGACAGCCAAGCTCTGGAATGTTCAGACAGGAGCGCAGTTGTTTACTTTCAATTTTGACTCTCCAGCGAGGTCTGTTGAT TTATCTGTTGGTGATAAGCTCGCCGTCATTACAACTGATCCATTTATGGCTTTCACTTCCGCGGTCCATGTCAAGCGGATTGCCGCTGATCCTTCTGACC AGACTGGTGACTCAACTCTAGTGCTTAAGGGACCTCAGGGCAGAATCAATAGAGCTGTTTGGGGACCCCTCAACCGGACCATTATCACTGCTGGAGAGGA TGCTGTCATCCGGAGATGGGATACTGAGACAGGAAAGCTGCTACAAGAGTCAGAACCAGAAGTTGGACATAAGAAGCAAATAACATCGCTTACAAAGTCT GCTGATGGTTCACACTTCGTCACTGGTTCTTTGGATAAATCAGCCAAGCTTTGGGACATCAGAGATTTGTCTCTAATCAAGACGTATGTGACCGAGAGAC CAGTAAATGCAGTTACAATGTCACCACTTCTTGATCATGTTGTGTTGGGTGGTGGTCAAGATGCATCAGCTGTTACCACAACCGATCACCGTGCTGGGAA GTTTGAAGCAAAATTCTTTGACAAGATTCTTCAAGAAGAGATTGGAGGAGTAAAAGGTCATTTCGGTCCCATCAATGCTCTGGCTTTCAACCCTGATGGG AAAAGCTTCTCGAGTGGAGGTGAAGATGGTTATGTAAGGCTACATCACTTTGACCCTGACTACTTCAACATCAAGATATAA
AA sequence Show only first row Show all	>Lus10021857 pacid=23158026 polypeptide=Lus10021857 locus=Lus10021857.g ID=Lus10021857.BGIv1.0 annot-version=v1.0 MRPILMKGHERPLTFLKYNREGDLLFSCAKDHDPTVWFADNGERLGTYRGHNGAVWSCDVSRDSMTLITASADQTAKLWNVQTGAQLFTFNFDSPARSVD LSVGDKLAVITTDPFMAFTSAVHVKRIAADPSDQTGDSTLVLKGPQGRINRAVWGPLNRTIITAGEDAVIRRWDTETGKLLQESEPEVGHKKQITSLTKS ADGSHFVTGSLDKSAKLWDIRDLSLIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG KSFSSGGEDGYVRLHHFDPDYFNIKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	0	1
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	1.0	0.9640
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	3.2	0.9234
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10039984 [exp]	3.2	0.8918
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	6.0	0.9228
AT1G10840		TIF3H1	translation initiation factor ...		Lus10020427 [exp]	8.5	0.8837
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	9.4	0.8614
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	9.8	0.8842
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10021583 [exp]	11.4	0.8811
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	13.4	0.8907
AT5G53480			ARM repeat superfamily protein...		Lus10034318 [exp]	13.6	0.9027

Compare expression of checked genes

Lus10021857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.