Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55535 240 / 1e-78 unknown protein AT3G13420 201 / 2e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010333 [exp] 343 / 4e-120 AT1G55535 286 / 2e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001400 [exp] 261 / 1e-87 AT1G55535 273 / 6e-93 unknown protein Potri.003G223300 [exp] 189 / 1e-59 AT1G55535 207 / 3e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021858 pacid=23157963 polypeptide=Lus10021858 locus=Lus10021858.g ID=Lus10021858.BGIv1.0 annot-version=v1.0 ATGGGAATAATAAGAAGAAGAAGACGACCTAGGTGGAAGCAAGGAGCTTGCCAGTTTCCAGCCAACAAAGACAGTCCAATTATACACGCAGAGGTATATG CACCTGGCCACAGAGAAATCCAGCCATTATTAGACAAAGGGGGGGTGTTGCCGGATTGGCGGATGGGGAAGATGGAGAGTCAGGAGAGAAGATGGCTGGG AAGAAGCAACCACGACAGAGGGGCGGTGATCTTCGTCGCTGCCAAGAAAACGGGGAGAACGGGAGGCCAAAGATACTCGTCGCCGCCGATAACCACAACA ACGGAACAATGGTCTTGGGAAGCTATAACCCGTCGTCTGCAGAATTGGCTTCGTGACTATGATAGGCTTCAGTATGTGGCTGTCATCCTCATCTACATTC AGATAGGATGCTCTTTGATTGGATCCCTGGGAGCATTGTACACGGGGGTTTTGCTCATCAATCTCAGCATCGCATTGTTCGCTCTTGTCGCCATTGAGAG TAGCAGTCAGAGTCTCGGCCGCACTTATGCCGTCCTTCTCTTCTCCTCCATCTGCCTCGACATTTCCTGGTTCTTCTTTTTCTTCTCTGATATTTGGGAA ATTTCTTCCGAGGCATATGGAGTGTTGTTCATCTTTTCAGTGAAACTCACTTTGGCAATGCAGATTGTTGGATTTTCTGTGAGGTTATCATCATCTTTCT TGTGGATTCAGATATATAGGTTGGGAGTATCAAATGTAGAGAGTGGAGCTCCACGAGAAGCAGATTTTGATTTGAGAAATAGCTTTTTGAGTCCTACAAC TCCTGTTGTAGCTAGACAATGCTCCGAGTCTGATGTTTTAGGGGGTGCTATTTATGATCCCTCTTACTATTCGTCGCTCTTTGAAGATGGTCAAGAAAAT AGAGGATTGCATGGGGTGGGTATCATCTGA
AA sequence Show only first row Show all	>Lus10021858 pacid=23157963 polypeptide=Lus10021858 locus=Lus10021858.g ID=Lus10021858.BGIv1.0 annot-version=v1.0 MGIIRRRRRPRWKQGACQFPANKDSPIIHAEVYAPGHREIQPLLDKGGVLPDWRMGKMESQERRWLGRSNHDRGAVIFVAAKKTGRTGGQRYSSPPITTT TEQWSWEAITRRLQNWLRDYDRLQYVAVILIYIQIGCSLIGSLGALYTGVLLINLSIALFALVAIESSSQSLGRTYAVLLFSSICLDISWFFFFFSDIWE ISSEAYGVLFIFSVKLTLAMQIVGFSVRLSSSFLWIQIYRLGVSNVESGAPREADFDLRNSFLSPTTPVVARQCSESDVLGGAIYDPSYYSSLFEDGQEN RGLHGVGII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55535			unknown protein		Lus10021858 [exp]	0	1
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	1.4	0.8626
AT5G61450			P-loop containing nucleoside t...		Lus10031740 [exp]	1.4	0.8618
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10010585 [exp]	3.7	0.8319
AT5G41120			Esterase/lipase/thioesterase f...		Lus10012560 [exp]	3.9	0.8482
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	4.9	0.8441
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	9.5	0.8214
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	10.0	0.8439
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	10.2	0.8294
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	12.0	0.8147
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	13.2	0.8369

Compare expression of checked genes

Lus10021858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.