Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44430 139 / 2e-36 DNA-binding bromodomain-containing protein (.1) AT3G60110 108 / 9e-26 DNA-binding bromodomain-containing protein (.1) AT3G57980 72 / 2e-13 DNA-binding bromodomain-containing protein (.1) AT2G42150 65 / 3e-11 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010335 [exp] 449 / 2e-154 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10031219 [exp] 99 / 2e-22 AT3G57980 177 / 3e-47 DNA-binding bromodomain-containing protein (.1) Lus10031796 [exp] 99 / 2e-22 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10011227 [exp] 44 / 0.0002 AT1G61215 288 / 7e-93 bromodomain 4 (.1) Lus10018457 [exp] 43 / 0.0004 AT1G61215 288 / 6e-93 bromodomain 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G023100 [exp] 147 / 3e-39 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1) Potri.001G229300 [exp] 145 / 3e-38 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 112 / 9e-27 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.003G212500 [exp] 109 / 6e-26 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G013600 [exp] 108 / 1e-25 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.004G036900 [exp] 45 / 6e-05 AT1G61215 323 / 1e-105 bromodomain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10021861 pacid=23158078 polypeptide=Lus10021861 locus=Lus10021861.g ID=Lus10021861.BGIv1.0 annot-version=v1.0 ATGGATATGATTCGGGCCCATGAACATAGCTCCTTGTTTGAGCGCTTTCTCCAAAGCCAGGACATTGATGCTTACAGCAAAATAGTGAAGCAGCATTTGG ATTTGGAAATCATACAATCCAAGTTACTGTGTGACCAGCATTCCTATCCTTCCAGCCTCTTGTTCTACCGAGATCTCTTGCTTATCTTCACCAATGCCAT CGTTTTCTTCCCCAAATCCTCCGCTCAATCCCTTGCTGCTAAGCAACTCAGATCGCTTGTCGTCCGTGAAATGAAGAAAGAACCCGTCATCCTCAAGTCC GATTCTTCTCAACCCACTGACAGCATCCCCCCACCTCAGCAGCCTAAAGTCGTCGAACCTGAGAAGCTGCCAACTCCCCTCGTTGTATGTCGCAGGAGGA GCTCAATGTCGGCTAAGCCTTCCTCTTCCTCTTCGGTTCAAAAGGTTGAGCAGCCCGTGGTTGCAGTGACACAGCAGCCAAAGGAAAGCAGCACGGATCG TGAAGTTGAACAGAGGCCACCGCCGATTGTGAAGCCAGAGAAGAAGGCGGTTACTGGCGCAAGAAGCTCGAGAAGAAGCAACAAGAAGAACGCGACGAAA GCCATTCCCAGCAGCACCAGCAGCAAAAAGCAAAACGGAAGCCCTAGGAACAAGGCAACAACAACTACAGCTGACAAGCTGGAAACGCCCAAAAAGAAAA CCGAGGCTTCTGGGTCGGAGAAGAAACGCAGTGCGGCAGCAGACTTCTTGAAGAGGATCAAGAAGAACTCTCCAGGCGATGCACTGTCGAAGAAGAGCAG TACTGCAGGTAATTCTCCAGGTGATGCACTGTTGAAGAAGAAGAGTGGAGTTAGAAATGGCGGAGGAGCTGGAGAGAAGAAGAAGACGAAGGAAGAGAAA CGAAAGGGGAGAGGGAAACAGAGATTGTTGAGGAGCAATGACGAGAAGAAACCATCAGCGGCGAAGGAGGTGAATAAGCCTACTGCCGGCGGTGAAGGGA GCGGGAAGAATGGTTCCACCTCAGGTAATAAGCGAGGGAGGCCGGAGAGCGGAAGCGGGGTAAAGGAGGCTGCTGTCCAGAAGAAGCCAAGAAAAAGAGC TAGGAGGTAG
AA sequence Show only first row Show all	>Lus10021861 pacid=23158078 polypeptide=Lus10021861 locus=Lus10021861.g ID=Lus10021861.BGIv1.0 annot-version=v1.0 MDMIRAHEHSSLFERFLQSQDIDAYSKIVKQHLDLEIIQSKLLCDQHSYPSSLLFYRDLLLIFTNAIVFFPKSSAQSLAAKQLRSLVVREMKKEPVILKS DSSQPTDSIPPPQQPKVVEPEKLPTPLVVCRRRSSMSAKPSSSSSVQKVEQPVVAVTQQPKESSTDREVEQRPPPIVKPEKKAVTGARSSRRSNKKNATK AIPSSTSSKKQNGSPRNKATTTTADKLETPKKKTEASGSEKKRSAAADFLKRIKKNSPGDALSKKSSTAGNSPGDALLKKKSGVRNGGGAGEKKKTKEEK RKGRGKQRLLRSNDEKKPSAAKEVNKPTAGGEGSGKNGSTSGNKRGRPESGSGVKEAAVQKKPRKRARR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	0	1
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	1.0	0.9084
					Lus10007413 [exp]	4.5	0.7931
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10014843 [exp]	5.5	0.8139
AT4G40045			unknown protein		Lus10043427 [exp]	6.0	0.7421
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	8.5	0.8234
AT5G13340			unknown protein		Lus10035960 [exp]	12.3	0.8233
AT3G49601			unknown protein		Lus10000736 [exp]	12.6	0.8065
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	15.3	0.8279
AT5G07960			unknown protein		Lus10034695 [exp]	20.5	0.7776
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10000651 [exp]	21.8	0.8041

Compare expression of checked genes

Lus10021861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.