Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38830 673 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT2G31170 614 / 0 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT3G56300 537 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010336 [exp] 1022 / 0 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10041428 [exp] 1009 / 0 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10034343 [exp] 1003 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001921 [exp] 572 / 0 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001953 [exp] 235 / 5e-73 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001954 [exp] 196 / 1e-55 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122500 [exp] 746 / 0 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.018G024300 [exp] 601 / 0 AT2G31170 856 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Potri.004G226700 [exp] 44 / 0.0005 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 42 / 0.001 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.008G122901 [exp] 0 / 1 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01406 [flax] [poplar] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10021862 pacid=23157973 polypeptide=Lus10021862 locus=Lus10021862.g ID=Lus10021862.BGIv1.0 annot-version=v1.0 ATGGCGGAGGGATCAGAAGTGGATGAGAAGATGGCGTTCAGGTTGTACAATACAATGAGTAAAACTGTGGAGCTTTTCAAGCCCATCGTTCCTGGCAAAG TTGGCATGTACGTGTGTGGTGTAACTGCGTACGACCTAAGCCACATTGGACATGCTCGTGCTGCGGTAGTATTTGATGTTCTCTTCAGGTACCTGCAGCA CTTGGGTTATGAAGTTACCTACGTGAGGAACTTTACGGATATTGATGACAAGATAATTAAGCGTGCAAATGAACTTAATGAAGATCCGTTGTCCTTGAGT AATCGCTTCTGTGAAGAGTATCTTCTTGACATGGGAAGGCTGCAGTGCCTCCCTCCAACTCATCAGCCACGGGTAACTGAACACATGGACAATATCAAGA ACATGATCATGCAGATTATGCAAAATGGCTGTGCATATGCTGTTGAAGGAGATGTATTCTTTGCGGTTGAGAAGTCTCCAAACTACGGGCAATTATCCGG GAGGAAGTTAGAGGACAACAGAGCTGGTGAACGTGTTGCAGTTGACTTAAGAAAGCGTAATCCTGCAGACTTTGCTCTATGGAAGGCTGCAAAGGAGCAT GAACCAAGATGGGACAGCTCATGGGGCCCGGGAAGACCAGGATGGCATATAGAATGCAGTGCAATGAGTGCACACTATCTTTCTTTCAAATTTGATATTC ATGGTGGGGGAAGCGATTTGATCTTCCCACATCACGAAAATGAAGTAGCTCAAAGTGGTGCTGCTTGCAGCGAAAGCAAAATAAATTTTTGGATTCACAA TGGACATGTCACCAATAATCATTTGAAGATGTCAAAATCATTGGGCAATTTTTTCACCATTCGTCAGATTATTGAAAAGTACCATCCACTGGCTTTGCGG ATGTTCTTGATGAGTGCTCACTATTGTTCCCCGCTTAATTACTCCATTGATCAGATAGAAAAGGCGTCGGATACTGTTTCTTACATTTATCAGACGTTGC ACGACTGCGAGGTTGCTTTATTACCATTTCAAGAAAGCTTAAAGGAAGCATGTAGCACAAAGAATGAAAAGAAAGACAAGACCATTCAGAAGGCCCAAGA ATGCGTCACTAGCCTGCAAAATGATTTTGAAGCTAAAATGTCCGACGATTTAAACACGTCACATGTGTTAACTGGTGCATTCCATGAAGCTTTGAAGTTC CTAAATGCTAATTTAAGCCCTCCAAAGAAGAAGCAGCAGAAGCAACAGCTAACGTCATTAACCAAGTACCTTGGTGAATTAGCAAGAGAAATTGAGAGGG TACTTAGGATTCTGGGCTTGCTGCCAACTGGCAGCTATAGCGAGGTTTTGCAGCAGTTCAAAGAGAAGGCATTGATTAGGGCTGAATTGGAGGAAGAGGA TGTTGGTCGGTTGATTGAAGATAGGAAAGCTGCAAGGAAAAATAAGGAGTTTGCAAGAAGTGATGAGATCAGAGCTGATTTAGCTAAGAAGGGAATTGCA CTGATGGATGTCGGGACTGAAACAGTTTGGAGACCATGTGTTCCTGTCGTGCAAGAAGAAGAGGCAGGTGTAGAGGCAGTAGGGTTAGAGGAGCAGAGTT CATCAACGTCAGTGCCAAGTTAG
AA sequence Show only first row Show all	>Lus10021862 pacid=23157973 polypeptide=Lus10021862 locus=Lus10021862.g ID=Lus10021862.BGIv1.0 annot-version=v1.0 MAEGSEVDEKMAFRLYNTMSKTVELFKPIVPGKVGMYVCGVTAYDLSHIGHARAAVVFDVLFRYLQHLGYEVTYVRNFTDIDDKIIKRANELNEDPLSLS NRFCEEYLLDMGRLQCLPPTHQPRVTEHMDNIKNMIMQIMQNGCAYAVEGDVFFAVEKSPNYGQLSGRKLEDNRAGERVAVDLRKRNPADFALWKAAKEH EPRWDSSWGPGRPGWHIECSAMSAHYLSFKFDIHGGGSDLIFPHHENEVAQSGAACSESKINFWIHNGHVTNNHLKMSKSLGNFFTIRQIIEKYHPLALR MFLMSAHYCSPLNYSIDQIEKASDTVSYIYQTLHDCEVALLPFQESLKEACSTKNEKKDKTIQKAQECVTSLQNDFEAKMSDDLNTSHVLTGAFHEALKF LNANLSPPKKKQQKQQLTSLTKYLGELAREIERVLRILGLLPTGSYSEVLQQFKEKALIRAELEEEDVGRLIEDRKAARKNKEFARSDEIRADLAKKGIA LMDVGTETVWRPCVPVVQEEEAGVEAVGLEEQSSSTSVPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10021862 [exp]	0	1
AT1G74680			Exostosin family protein (.1)		Lus10002060 [exp]	5.9	0.9078
AT3G22070			proline-rich family protein (....		Lus10039700 [exp]	6.9	0.8960
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	8.7	0.8928
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10029791 [exp]	12.1	0.8834
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	13.7	0.9027
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	14.3	0.9053
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	15.2	0.8974
AT2G15000			unknown protein		Lus10020971 [exp]	16.3	0.8642
AT5G52370			unknown protein		Lus10040713 [exp]	16.7	0.9008
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	17.5	0.8887

Compare expression of checked genes

Lus10021862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.