Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04420 167 / 4e-51 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010340 [exp] 215 / 9e-70 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10028045 [exp] 66 / 3e-13 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10003751 [exp] 53 / 4e-09 AT1G04420 174 / 1e-51 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167400 [exp] 174 / 7e-54 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G042100 [exp] 66 / 2e-13 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10021866 pacid=23158046 polypeptide=Lus10021866 locus=Lus10021866.g ID=Lus10021866.BGIv1.0 annot-version=v1.0 ATGCCACCCAAACAACTGCAACATTGGCCTGCTAGCTTACTCTCCCCTGGCTGGTGGAGCGCTCTGGGGAAATACTTGGATTTGGATTCTGAAGCTGCCA AGAAAGGGAGATTCAATCTCTTCCCAGGTTACATGACAAGATACAGAGATTCACTTGCGAGGGAAGCAACAGTAGAGTACATCGAAGTGGGGAAAAAGCA CGGTTTAACGCCTGTTCAGCTGGCCCTGGGATTCGTTCGAGATTGTCCCTTTGTCACAAGTTCTATCGTGGGGGCGACCTGTGTTGGCCAACTTAAAGAG GACACTGATGCTTTTCTGGGCACTGAGCGACCTTTGTCACCCGAAGTAGTGGCCGATATCGAGAGCATATTCAAGAGATACAAAGATCCTGCCATCCTGT AG
AA sequence Show only first row Show all	>Lus10021866 pacid=23158046 polypeptide=Lus10021866 locus=Lus10021866.g ID=Lus10021866.BGIv1.0 annot-version=v1.0 MPPKQLQHWPASLLSPGWWSALGKYLDLDSEAAKKGRFNLFPGYMTRYRDSLAREATVEYIEVGKKHGLTPVQLALGFVRDCPFVTSSIVGATCVGQLKE DTDAFLGTERPLSPEVVADIESIFKRYKDPAIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10021866 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10033779 [exp]	15.5	0.7551
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	17.5	0.7528
AT4G17360			Formyl transferase (.1)		Lus10007482 [exp]	45.1	0.7092
					Lus10021867 [exp]	45.8	0.6825
AT1G78760			F-box/RNI-like superfamily pro...		Lus10024701 [exp]	75.4	0.7093
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	115.7	0.6973
AT3G14640		CYP72A10	"cytochrome P450, family 72, s...		Lus10019354 [exp]	124.9	0.6775
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	134.1	0.6705
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	162.6	0.6786
AT5G58030			Transport protein particle (TR...		Lus10036292 [exp]	188.4	0.6514

Compare expression of checked genes

Lus10021866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.