Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 330 / 2e-109 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03890 292 / 5e-95 RmlC-like cupins superfamily protein (.1) AT1G03880 285 / 5e-92 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 266 / 5e-84 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 111 / 3e-27 RmlC-like cupins superfamily protein (.1) AT1G07750 98 / 2e-22 RmlC-like cupins superfamily protein (.1) AT2G28490 63 / 2e-10 RmlC-like cupins superfamily protein (.1) AT4G36700 56 / 4e-08 RmlC-like cupins superfamily protein (.1) AT2G18540 54 / 1e-07 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010341 [exp] 723 / 0 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 553 / 0 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 551 / 0 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 545 / 0 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 540 / 0 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 373 / 4e-126 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 372 / 8e-126 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 368 / 4e-124 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022929 [exp] 310 / 8e-102 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G308050 [exp] 470 / 3e-164 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 468 / 4e-163 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 462 / 8e-161 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 461 / 2e-160 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 456 / 9e-159 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 379 / 1e-128 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 377 / 1e-127 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 282 / 5e-91 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.007G047200 [exp] 111 / 3e-27 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.008G102900 [exp] 110 / 7e-27 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10021868 pacid=23158019 polypeptide=Lus10021868 locus=Lus10021868.g ID=Lus10021868.BGIv1.0 annot-version=v1.0 ATGAGGAAATATATATTGCCATTTACCATTTATAGATATAAGGGTATTTTTTACGAAAACAATCGGCGGCAACTAGGGTACAGCAGGAGAGGGTATCACG GAGCTGCTATCCCGGGCTGCCCTGAGACATACCAATCGCAGGAGGAGTCGGGTTCCCGCCAAGACCCGAGACAGGGTATCAGAGACGAACACCAGAAGGT CCGTAAGATACGGGAAGGAGATATCATAGCAATTCCAGCTGGAGTTGCTGATTGGTTCTACAACGATGCTCAATCTCCTCTTGTCCTCGTCCAAATCTTC GACACCAGCAACTCCGACAACCAGCTCGACCAGAACTTCAGGAAATTCTTCCTGGCTGGGAACCCACAAAGACAAATCCAAGGGCAGAGACGGGACCAAT CGTCGTCGCCGGCGCACCTATACGGGAGAGGCGGCGAGTCCACCCGAAGAGGAGGCCAGCAGGAACAACAACAACATTCTGGAAACATCTTCCAAGCATT CGACGAGCAGTTCTTGGCGGAGGCTTTCAACATCGACACCGACCTTGCGAGGAGGATCAAGAGCCAGAACGACAACAGAGGAATTATCGTCAGAGTCGAG GAACAGCTCGAGTTCCTTAGCCCCGAGTTCAGCCAGCAGGAGGAGCGTGAATTCCGAGGCAGCGGCAGGTACTCCAACGGCATTGAGGAAACATACTGCA CCGCCAAGTTGAAGCAGAACATCAACGACCCATCACGCGCCGACATATTCAACCCACGCGCCGGCCGCCTCACCACCGTTAACAGATTCAGCCTTCCTAT CCTCCGTTACCTCCAGCTCAGTGCCCAAAAGGGCCATCTGTACCGAAACGCAATCATGGCGCCGCACTGGAACATGAACGCGCACAGCATCAACTACATA ACGAGGGGGAGCGGGCAGATCCAGATAGTGAACGAGAACGGGGAGCGCGTGTTCGACGGGCAAGTCCAGGAAGGGCAGATAATCACTTCGCCGCAGAACT TTGCGGTGGTGAAGAGAGCAGGAAACGAAGGGCTGGAGTGGATCTCGTTCAAGACCAACGACAATGCCAAGATCAGCCAGATCGCGGGGCGGGCTTCCAC TATTCGGGCGATTCCTCAGGATGTGATCGCTAACTCGTTCGGGATTTCGTTGGAAGAGGCCCGAAGGATCAAGTTCAACCGGGATGAGATCGGGATCTTT AGCCCTGGCACCAGGTCCCGTTTCGGCAGAAACTGA
AA sequence Show only first row Show all	>Lus10021868 pacid=23158019 polypeptide=Lus10021868 locus=Lus10021868.g ID=Lus10021868.BGIv1.0 annot-version=v1.0 MRKYILPFTIYRYKGIFYENNRRQLGYSRRGYHGAAIPGCPETYQSQEESGSRQDPRQGIRDEHQKVRKIREGDIIAIPAGVADWFYNDAQSPLVLVQIF DTSNSDNQLDQNFRKFFLAGNPQRQIQGQRRDQSSSPAHLYGRGGESTRRGGQQEQQQHSGNIFQAFDEQFLAEAFNIDTDLARRIKSQNDNRGIIVRVE EQLEFLSPEFSQQEEREFRGSGRYSNGIEETYCTAKLKQNINDPSRADIFNPRAGRLTTVNRFSLPILRYLQLSAQKGHLYRNAIMAPHWNMNAHSINYI TRGSGQIQIVNENGERVFDGQVQEGQIITSPQNFAVVKRAGNEGLEWISFKTNDNAKISQIAGRASTIRAIPQDVIANSFGISLEEARRIKFNRDEIGIF SPGTRSRFGRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10021868 [exp]	0	1
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10017671 [exp]	8.1	0.7399
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10013684 [exp]	10.9	0.7628
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	32.8	0.7165
AT2G39855			unknown protein		Lus10040250 [exp]	34.3	0.7277
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	53.9	0.7126
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	85.6	0.7073
AT5G08420			RNA-binding KH domain-containi...		Lus10042479 [exp]	104.4	0.6987
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	128.0	0.6896
AT5G04885			Glycosyl hydrolase family prot...		Lus10013647 [exp]	207.6	0.6596
AT4G26540			Leucine-rich repeat receptor-l...		Lus10005848 [exp]	217.4	0.6490

Compare expression of checked genes

Lus10021868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.