Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14380 40 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041144 [exp] 375 / 2e-128 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10011818 [exp] 169 / 2e-51 AT4G14380 59 / 3e-10 unknown protein Lus10021182 [exp] 167 / 1e-50 AT4G14380 52 / 6e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167200 [exp] 76 / 2e-16 AT4G14380 87 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021869 pacid=23158086 polypeptide=Lus10021869 locus=Lus10021869.g ID=Lus10021869.BGIv1.0 annot-version=v1.0 ATGCCTCGCTCTTCATCCTCCGCCTGCTCCAGGAAGCTCCACCCGCTGAAGCGATTGCTCGCAAAGCTCCAATCCAAGCTCAGTGAACTGGACCTGCTCA TCCGAAACCGAACCAACCGGATCATCACCCATGTCTTCCCACACAACAGCAGCAGCAACCGGCACAGATCACTCGTGCCCAAAACGCCGTCGTATCAGCT CCACAGCCATTACAACTACATCTCCGATTACTACAGTACCAACCGCAACAGCAGCAACCGCAAAATACTCCTCCACAAGAAGAAGAAGAATAATGTCTCC GCAATCTACATCGACCACCTCTACTCTGAGGAGCCTTCTTCAATCTTGAATTCCAATTCCAATCTTACAGCCTTGGATACTGAGCCGGCTAAAACGACGA CGGAGACTGCAGGTAAGGAAATGGTGACTAGTACTACTTATAGCGCTAGTTATACAAGGCCGCCGTTGCCCAGGGTTGATAGAAGTAACAACAATGGTGG CGGAGATGGGGCGGCGGTGGATCAAACGGTGGTACAGAGGAGGAGGAAGAAGAAAAAGGAGGCGGCGCCTGTAGTGATTGTGGAGGAGAAGAATAGTGGT TATAATTCTGTGGAGACTCTGGAAGATGCGTGGCGGGAAGTGGTGGCGAGATCGCCGCAGCTCCGGCCGGTGGAGGTGAGGACGGAGGAGTTCGTATATC AGTTCCAGAAGATCCAGAGGGCTGATCTGTCCATTGTTGAGATGCTGGCCACGGGTTCCTACTGA
AA sequence Show only first row Show all	>Lus10021869 pacid=23158086 polypeptide=Lus10021869 locus=Lus10021869.g ID=Lus10021869.BGIv1.0 annot-version=v1.0 MPRSSSSACSRKLHPLKRLLAKLQSKLSELDLLIRNRTNRIITHVFPHNSSSNRHRSLVPKTPSYQLHSHYNYISDYYSTNRNSSNRKILLHKKKKNNVS AIYIDHLYSEEPSSILNSNSNLTALDTEPAKTTTETAGKEMVTSTTYSASYTRPPLPRVDRSNNNGGGDGAAVDQTVVQRRRKKKKEAAPVVIVEEKNSG YNSVETLEDAWREVVARSPQLRPVEVRTEEFVYQFQKIQRADLSIVEMLATGSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14380			unknown protein		Lus10021869 [exp]	0	1
					Lus10022013 [exp]	5.1	0.7797
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	5.5	0.7914
AT5G44005			unknown protein		Lus10003608 [exp]	9.3	0.7766
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10015154 [exp]	10.7	0.7727
AT5G44005			unknown protein		Lus10003610 [exp]	13.2	0.7694
AT5G44005			unknown protein		Lus10008220 [exp]	14.0	0.7692
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	15.0	0.7734
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031192 [exp]	16.2	0.7623
AT2G17550			unknown protein		Lus10016693 [exp]	17.5	0.7499
AT5G47740			Adenine nucleotide alpha hydro...		Lus10043338 [exp]	18.7	0.7447

Compare expression of checked genes

Lus10021869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.