Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43330 602 / 0 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT1G04410 595 / 0 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G56720 511 / 0 c-NAD-MDH3 cytosolic-NAD-dependent malate dehydrogenase 3, Lactate/malate dehydrogenase family protein (.1) AT5G58330 251 / 2e-80 lactate/malate dehydrogenase family protein (.1.2.3) AT3G47520 62 / 1e-10 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041144 [exp] 633 / 0 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10011819 [exp] 627 / 0 AT5G43330 613 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021184 [exp] 330 / 2e-114 AT5G43330 322 / 1e-111 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10038668 [exp] 241 / 7e-77 AT5G58330 707 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10037935 [exp] 241 / 6e-75 AT5G58330 709 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10021183 [exp] 123 / 3e-35 AT1G04410 123 / 6e-36 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10013680 [exp] 62 / 2e-10 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10039642 [exp] 60 / 1e-09 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10017939 [exp] 58 / 3e-09 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071000 [exp] 612 / 0 AT5G43330 602 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.008G166800 [exp] 611 / 0 AT5G43330 605 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.002G141700 [exp] 571 / 0 AT1G04410 572 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.002G141900 [exp] 506 / 0 AT1G04410 501 / 5e-180 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.008G031700 [exp] 228 / 1e-71 AT5G58330 710 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Potri.004G054200 [exp] 64 / 2e-11 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.017G152000 [exp] 62 / 7e-11 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.001G376500 [exp] 59 / 2e-09 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10021870 pacid=23158075 polypeptide=Lus10021870 locus=Lus10021870.g ID=Lus10021870.BGIv1.0 annot-version=v1.0 ATGGCGAAGGATCCAGTTCGCGTTCTCGTCACCGGAGCTGCAGGACAAATCGGATATGCTCTTGTTCCCATGATTGCTAGGGGAGTGATGCTTGGTGCTG ATCAGCCAGTCATCCTCCACATGCTCGATATTCCACCTGCAGCAGAAGCATTGAACGGTGTCAAGATGGAGTTGGTAGATGCTGCCTTTCCTCTTCTTAA AGGCGTTGTTGCTACAACTGATGCTGTGGAGGCCTGCACCGGGGTCAACATCGCAGTCATGGTTGGTGGTTTCCCCAGGAAGGAAGGTATGGAGAGGAAG GATGTGATGTCTAAGAATGTCTCCATTTACAAGTCACAGGCTTCTGCCCTTGAGAAGCATGCCGCTCCAAACTGCAAGGTTCTGGTTGTTGCTAACCCAG CAAACACCAATGCTTTAATACTGAAGGAATTCGCACCATCTATCCCTGAGAAAAACATTACCTGCTTGACTAGACTTGACCACAACAGGGCCCTTGGTCA GATCTCAGAGAGACTCAATGTTCCAGTTTCTGATGTGAAAAATGTTATCATTTGGGGAAATCATTCTTCCACCCAATACCCTGATGTCAACCATGCTACT GTTGGTGGCAAGCCTGTCAGAGAGCTTGTCAAGGATGATGAATGGCTCAATGCTGCATTCATTGCTACTGTCCAACAACGAGGTGCTGCTATCATCAAAG CCAGAAAGCTGTCCAGTGCACTCTCTGCTGCAAGCTCAGCTTGTGACCACATCCGTGACTGGGTTCTTGGAACTCCTCAGGGCACATGGGTTTCCATGGG TGTCTATTCTGATGGTTCATACAACGTCCCTGCTGGACTTATCTATTCCTTCCCTGTTACTTGCGAAAATGGGGAGTGGAAGATCGTCCAGGGACTTTCA ATTGATGAGTTCTCGAGGAAGAAGCTGGATCTGACCGCTGAGGAGCTGAGTGAGGAAAAGGCTCTTGCTTACTCGTGCCTCAACTAA
AA sequence Show only first row Show all	>Lus10021870 pacid=23158075 polypeptide=Lus10021870 locus=Lus10021870.g ID=Lus10021870.BGIv1.0 annot-version=v1.0 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK DVMSKNVSIYKSQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVPVSDVKNVIIWGNHSSTQYPDVNHAT VGGKPVRELVKDDEWLNAAFIATVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCENGEWKIVQGLS IDEFSRKKLDLTAEELSEEKALAYSCLN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	0	1
AT5G11280			unknown protein		Lus10002030 [exp]	1.7	0.9456
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	1.7	0.9654
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	5.0	0.9384
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10041144 [exp]	5.4	0.8985
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	6.3	0.9203
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	7.0	0.9320
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	7.3	0.9494
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	8.1	0.9196
AT2G20820			unknown protein		Lus10031625 [exp]	10.2	0.9222
AT3G22070			proline-rich family protein (....		Lus10039700 [exp]	10.4	0.8992

Compare expression of checked genes

Lus10021870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.