Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43400 793 / 0 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43390 742 / 0 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G13210 528 / 2e-179 Uncharacterised conserved protein UCP015417, vWA (.1) AT3G24780 495 / 6e-166 Uncharacterised conserved protein UCP015417, vWA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041147 [exp] 1281 / 0 AT5G43400 823 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016990 [exp] 396 / 2e-134 AT5G43400 318 / 7e-106 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10013399 [exp] 314 / 3e-102 AT5G43400 261 / 2e-83 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016989 [exp] 125 / 6e-30 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10021874 [exp] 61 / 9e-12 ND 56 / 4e-11
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165200 [exp] 721 / 0 AT5G13210 851 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Potri.009G091400 [exp] 266 / 9e-80 AT5G43400 339 / 3e-108 Uncharacterised conserved protein UCP015417, vWA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11443 [flax] [poplar] DUF2828 Domain of unknown function (DUF2828)
Representative CDS sequence Show only first row Show all	>Lus10021875 pacid=23157987 polypeptide=Lus10021875 locus=Lus10021875.g ID=Lus10021875.BGIv1.0 annot-version=v1.0 ATGGTTTCATCCACGAAGATTCTCGGCCCTCCTTCAGTCGCCGGAACTGTCGTAGATCAGGTGGAGAGCACTGTTCTTGTAGCAATTCCATCAACCGAAA CTTCAGTCGAGGCCCTTGTTGCCAAGAGCTTGGCGCTAGGACTGGACGAGAATCCGCCTCGCCGCGGCCTGACGGAGCAAGGTTCCGCTACTCACCTCTC CACCGGTAATCCATGTCTCGATTTCTTCTTCCACATCGTCCCAGACACTCCCGCCGATGAGATGATCGAGCGAGTCCAATTGGCTTGGGATCATGATTCC ACTACTGCGCTCAAGCTGGTCTGCAATCTGCGAGGGGTGAGAGGAACTGGAAAGTCTGACAAAGAAGGTTTCTACGCCGCTGCGCTCTGGCTCTCCAATC ACCACCCCAAAACCCTTGCTCTCAACTGTAAGGCCTTCGCTGAGTTCGGCTATTTCAAAGATTTCGTTGAGATTCTCTATCGGATTCTCGAAGGTCTCGG TGTGAGGGAGAAAGTCAAACAGGAAAGGCAACTGGCACGCCTAGGGAAGAGGAGGACGAGGAGATTCCGACATTATTACGATTCCGAGTCGGCCGAAGCC CCCGAGTTAGAGGATGAGCAGCCAGCAAACGAAGCCAGCGAGTTAGAGGACGAACCGCCAGCAAACGGAGGCTCATCGGACTTGGGAGTAGAAGAACCCG ACGATTCAGACGAAGAGCCAGAATTTAAAGTGAGGATTAGAATGAGGCACAAGAAGGCGAACAAAGTCAAGAAAGCCAAGAAATCTGATGGCTCTGCTGT GGTGATTGACAAAGAAACCGCGAGGGCACTGCGCAAAGAGCGAGAGATCGCCAAAGCCATCAAGGCGTTGAACAAGTATAATACTGACCCCAATTACAAG CTCTTATTCGACTCTGTTGCTGATCTATTTGCAGATTTGTTGAAATCCGATACTGAGGCTTTGAAATCGAAGGATTACTCAAAAATCACCTTGGCAGCTA AGTGGTGCCCTTCAATTGATTCTTCCTACGACAAGTCATTGCTAATCTGTGAGGCAATTGCTCGTCGGATGTTTCCTAAGGAGAGCGACAAGCAGTATGA AGCCATGGAAGAGGCTCATTACGTTTATCGTGTACGAGACAGGCTTAGGAAAGAGATTTTGGTCCCTCTCCGTAAAGCTCTTCAGCTGCCCGAGGTGTAT ATGAGCGCACGAGAATGGAATACTCTTCCATATGGCAGAGTTCCATCTGTGGCAATGAAGAACTACAAGGACCATTTCATCAAGCACGATAAGGAGAGGT TTGAGCAGTATCTGGAGGATGTGAAGACTGGGAAGGCAAAGATTGCAGCTGGAGCATTGCTTCCTCATGAGATAATCGGCCAGTTGGAGGGTAAAGATGG AGGAGCAGTAGCGGAGCTTCAATGGGCGAGGGTGGTAGAAGACATGTCAAAGAAGGGGAAAATGAGCAATTGCATTGCTGTTTGTGATGTGTCTGGAAGC ATGACTGGAATTCCGATGGAGGTCTGTGTGGCGCTTGGGCTTCTGGTCTCGGAGCTAAGTGAGGAGCCATGGAAAGGGAAAGTGATTACATTCAGCGAAA ATCCCGAGATGCATCTGGTGGAGGGAAGCAGTCTGAAGGAGAAGACTGAGTTCATTAGAAGGATGGATTGGGGAGGGAGCACTAACTTTTACAAGGTGTT CGATAAGATCCTGGACACAGCAGTTGCAAACAACCTGTCTGAGGATCAACTGATCAAAAGGGTTTTTGTGTTCAGCGACATGGAATTCCACTCTGCATCA ACGGTCTACAACTACGGACACAACTATAACTACGGCAGAGGTGCATTCAACTATAACTATGGAGCTGCATACAACAGCAACAGTGACAACAGTGAGGAGG AGGAGGAGGAGGAGGAGGAAGAGGTGGGTGCGGTAGAAGAGGAGCCGAGGGAAAGGAAGTGGGAAACAGATTATGAGGCGATACAGAGGAAGTTTGGGGA GAAAGGGTACAAGAAGGTGCCGGAGGTAGTGTTTTGGAATCTGAGGAATTCAAGGGCTACTCCAGTGGCGGGAACTCAGAATGGGGTGGCTCTGGTGAGT GGGTTTTCGAAGAATTTGCTGACAATGTTTATGAATGAAGGTGGGATTGTGAATCCAGAAGATGTCATGGGATTATCTATTGCTGGAGAAGAGTATAAGA AGCTTGCGGTACATGACTGA
AA sequence Show only first row Show all	>Lus10021875 pacid=23157987 polypeptide=Lus10021875 locus=Lus10021875.g ID=Lus10021875.BGIv1.0 annot-version=v1.0 MVSSTKILGPPSVAGTVVDQVESTVLVAIPSTETSVEALVAKSLALGLDENPPRRGLTEQGSATHLSTGNPCLDFFFHIVPDTPADEMIERVQLAWDHDS TTALKLVCNLRGVRGTGKSDKEGFYAAALWLSNHHPKTLALNCKAFAEFGYFKDFVEILYRILEGLGVREKVKQERQLARLGKRRTRRFRHYYDSESAEA PELEDEQPANEASELEDEPPANGGSSDLGVEEPDDSDEEPEFKVRIRMRHKKANKVKKAKKSDGSAVVIDKETARALRKEREIAKAIKALNKYNTDPNYK LLFDSVADLFADLLKSDTEALKSKDYSKITLAAKWCPSIDSSYDKSLLICEAIARRMFPKESDKQYEAMEEAHYVYRVRDRLRKEILVPLRKALQLPEVY MSAREWNTLPYGRVPSVAMKNYKDHFIKHDKERFEQYLEDVKTGKAKIAAGALLPHEIIGQLEGKDGGAVAELQWARVVEDMSKKGKMSNCIAVCDVSGS MTGIPMEVCVALGLLVSELSEEPWKGKVITFSENPEMHLVEGSSLKEKTEFIRRMDWGGSTNFYKVFDKILDTAVANNLSEDQLIKRVFVFSDMEFHSAS TVYNYGHNYNYGRGAFNYNYGAAYNSNSDNSEEEEEEEEEEVGAVEEEPRERKWETDYEAIQRKFGEKGYKKVPEVVFWNLRNSRATPVAGTQNGVALVS GFSKNLLTMFMNEGGIVNPEDVMGLSIAGEEYKKLAVHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	0	1
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	1.0	0.9389
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	2.8	0.9202
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	3.0	0.9209
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	4.7	0.9299
AT4G19950			unknown protein		Lus10018322 [exp]	6.6	0.8750
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	7.9	0.9098
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	8.1	0.9188
AT3G59840			unknown protein		Lus10030936 [exp]	9.4	0.8922
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10033750 [exp]	9.8	0.9022
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10032624 [exp]	10.4	0.9154

Compare expression of checked genes

Lus10021875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.