Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14410 195 / 1e-62 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 184 / 6e-58 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G54680 164 / 3e-51 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 160 / 8e-49 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G19860 64 / 2e-12 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36060 61 / 4e-11 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041148 [exp] 317 / 1e-111 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021199 [exp] 270 / 8e-93 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022186 [exp] 265 / 7e-91 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10020069 [exp] 165 / 2e-51 AT5G54680 231 / 5e-77 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011167 [exp] 155 / 2e-47 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 152 / 1e-46 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041908 [exp] 61 / 3e-11 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10028456 [exp] 61 / 3e-11 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10008622 [exp] 41 / 0.0001 AT3G47640 100 / 6e-27 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072900 [exp] 245 / 3e-83 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 243 / 3e-82 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G031000 [exp] 168 / 2e-52 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G031800 [exp] 155 / 2e-47 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G132400 [exp] 142 / 4e-42 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 141 / 9e-42 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G113400 [exp] 66 / 1e-12 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 63 / 6e-12 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 59 / 2e-10 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.015G142700 [exp] 44 / 2e-05 AT3G47640 170 / 1e-52 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021876 pacid=23158011 polypeptide=Lus10021876 locus=Lus10021876.g ID=Lus10021876.BGIv1.0 annot-version=v1.0 ATGATGATATCCGTTCTGTGTTGCAGCGGTAGCGTGGAAATTGATTTCTCCAGCAGTGGTGCTGTCTCACAGTCGCAATTGAAGGAGGACTCTACGCGCA AGAGGACACGCTGTGATTCAAGTAGCAAGCCTGGAGCCAAAGCATGTCGTGAGAGGCTTCGGCGAGAGAGATTGAATGACAGGTTTCAAGATCTGAGCGC TGTTTTGGAACCTGGGAGACCTGTTAAAGTTGACAAACCAGCCATACTCGATGATGCCATCAGAGCTTTGAACCAGCTGAAATCCGAGGCACAGGAGCTC AAAGAAACAAATGAAAAACTACAAGAAGAAATAAAAAGCTTGAAGGCCGAAAAGAATGAACTCCGTGAGGAGAAACTTACACTCAAGGCTGACAAGGAAA GGATGGAGCAACAGGTGAAAGCTATGGGTGTTCCTCCGGCTTACCATGCTGGGGCTACCAAGATGCCCATGTACCCAGGTTATAGTCTGATACCAATGTG GCAGTATTTACCTCCCGCGGCCTATGACACATCTCGTGATCATGAGTTAAGGCCTCCTGCTGCCTAG
AA sequence Show only first row Show all	>Lus10021876 pacid=23158011 polypeptide=Lus10021876 locus=Lus10021876.g ID=Lus10021876.BGIv1.0 annot-version=v1.0 MMISVLCCSGSVEIDFSSSGAVSQSQLKEDSTRKRTRCDSSSKPGAKACRERLRRERLNDRFQDLSAVLEPGRPVKVDKPAILDDAIRALNQLKSEAQEL KETNEKLQEEIKSLKAEKNELREEKLTLKADKERMEQQVKAMGVPPAYHAGATKMPMYPGYSLIPMWQYLPPAAYDTSRDHELRPPAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021876 [exp]	0	1
AT5G05070			DHHC-type zinc finger family p...		Lus10035395 [exp]	2.0	0.8595
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	3.7	0.8647
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10007914 [exp]	3.9	0.8410
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10011008 [exp]	5.7	0.7875
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	5.9	0.8292
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10018285 [exp]	9.5	0.8305
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	13.0	0.7988
AT5G26990			Drought-responsive family prot...		Lus10015412 [exp]	17.9	0.8373
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042698 [exp]	19.7	0.8237
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	21.2	0.7731

Compare expression of checked genes

Lus10021876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.