Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14420 130 / 5e-39 HR-like lesion-inducing protein-related (.1) AT1G04340 110 / 1e-31 HR-like lesion-inducing protein-related (.1) AT5G43460 101 / 7e-28 HR-like lesion-inducing protein-related (.1) AT3G23190 53 / 6e-09 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041149 [exp] 224 / 3e-76 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10021205 [exp] 96 / 2e-25 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041152 [exp] 59 / 3e-11 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10022198 [exp] 59 / 1e-10 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073400 [exp] 161 / 2e-51 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1) Potri.008G165200 [exp] 159 / 2e-50 AT4G14420 182 / 8e-60 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 154 / 2e-48 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.008G165100 [exp] 105 / 1e-29 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.010G073500 [exp] 95 / 3e-25 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.002G040900 [exp] 44 / 2e-06 AT4G14420 62 / 1e-13 HR-like lesion-inducing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [flax] [poplar] DoxD-like PF05514 [flax] [poplar] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Lus10021877 pacid=23157978 polypeptide=Lus10021877 locus=Lus10021877.g ID=Lus10021877.BGIv1.0 annot-version=v1.0 ATGGCTTTCGCTTCCTTTGTCGGTCGAGTCCTCTTCGCTTCCATCTTCATGCTTTCCGCTTGGCAAGAGTTCAATGATTATGGCACTGATGGTGGGCTAG CAGCCAAGTCCTTAGAACCAAAACTACATGTCTTCTCAAAGCACGTATCAACAAACACTGGATTTGAAATTCCCGAGTTTGAGATCAAAGCAGCCGTTGC TGTTGCTATAGCTATGAAAGGCGTGGGAGGCCTTCTCTTCATCTTTGGCAGCTCTCTCGGAGCTTTTCTTCTGATTCTGCACCAGGCGATTTTCATCCCG ATATTGTACGACTTCTACAACTATGATCCAAGCATGAAAGAGTTCAACCAGCTGTTCATCAAATTCACTCAGAACTTGGCCCTGTTTGGAGCATTGCTGT TCTTCATTGGGATGAGGAACTCGATTCCCAGGAGACAACTGAAGAAGAAGCCTCACAAGAAACAACTCTAG
AA sequence Show only first row Show all	>Lus10021877 pacid=23157978 polypeptide=Lus10021877 locus=Lus10021877.g ID=Lus10021877.BGIv1.0 annot-version=v1.0 MAFASFVGRVLFASIFMLSAWQEFNDYGTDGGLAAKSLEPKLHVFSKHVSTNTGFEIPEFEIKAAVAVAIAMKGVGGLLFIFGSSLGAFLLILHQAIFIP ILYDFYNYDPSMKEFNQLFIKFTQNLALFGALLFFIGMRNSIPRRQLKKKPHKKQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	0	1
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	1.0	0.9115
AT1G70350			unknown protein		Lus10013008 [exp]	1.4	0.9092
AT4G25315			Expressed protein (.1.2)		Lus10019851 [exp]	3.6	0.8750
AT1G15420			unknown protein		Lus10007894 [exp]	6.0	0.8917
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	6.9	0.8987
AT4G14420			HR-like lesion-inducing protei...		Lus10041149 [exp]	7.5	0.8857
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	7.7	0.8649
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	9.2	0.8286
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10036987 [exp]	10.2	0.8938
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	10.6	0.8688

Compare expression of checked genes

Lus10021877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.