Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14450 47 / 5e-08 ATBET12 unknown protein AT3G23170 47 / 8e-08 unknown protein AT1G04330 39 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041157 [exp] 104 / 1e-30 AT4G14450 72 / 3e-17 unknown protein Lus10022200 [exp] 76 / 5e-19 AT4G14450 78 / 1e-19 unknown protein Lus10021208 [exp] 72 / 1e-17 AT4G14450 80 / 2e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G164801 [exp] 71 / 2e-17 AT4G14450 57 / 1e-11 unknown protein Potri.010G073900 [exp] 62 / 9e-14 AT4G14450 56 / 3e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021878 pacid=23158007 polypeptide=Lus10021878 locus=Lus10021878.g ID=Lus10021878.BGIv1.0 annot-version=v1.0 ATGGCCGACAGAAGCGGAAAGAGCAGGATCTCATCCTCCGCCCAGCAGAGCCGGCTCCAGCGTCGCAGACCGGCTTCCTTGCAGATAAGTCCCGCGGCAT GGAACGCTCCGATCCCTCTTCTCTCCCCGCTGCAGACCTCTCCCACCGCCGTCGAGATGGAGAGATGGAGAGAGGAGCAGAATCAGAACCAGCAGCGAGG AGGAGGACAGGCGGATAGTAAGGCTGTGGTTTTCAAGAAATGGCAGCATCCGGCGGCGCCCTTCTGTTACGAGCCGCCCAAGTTCAAGCCATCCTTCTTC GTTCCTGTATAG
AA sequence Show only first row Show all	>Lus10021878 pacid=23158007 polypeptide=Lus10021878 locus=Lus10021878.g ID=Lus10021878.BGIv1.0 annot-version=v1.0 MADRSGKSRISSSAQQSRLQRRRPASLQISPAAWNAPIPLLSPLQTSPTAVEMERWREEQNQNQQRGGGQADSKAVVFKKWQHPAAPFCYEPPKFKPSFF VPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	0	1
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	1.0	0.9455
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	3.0	0.9369
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	5.3	0.9414
AT4G38225			unknown protein		Lus10013843 [exp]	5.5	0.9309
AT2G36895			unknown protein		Lus10023001 [exp]	6.0	0.9230
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	7.7	0.9217
AT4G14615			unknown protein		Lus10006639 [exp]	8.5	0.9319
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	8.8	0.9141
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	10.0	0.9049
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	10.9	0.9280

Compare expression of checked genes

Lus10021878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.