Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14455 110 / 5e-32 ATBS14B ,ATBET12 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) AT3G58170 100 / 2e-28 ATBET11, ATBS14A ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041158 [exp] 144 / 3e-45 AT4G14455 164 / 6e-53 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Lus10033868 [exp] 102 / 8e-29 AT3G58170 187 / 1e-62 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10024876 [exp] 100 / 2e-25 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10014756 [exp] 71 / 3e-15 AT5G11010 440 / 2e-152 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10000706 [exp] 69 / 1e-14 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074100 [exp] 129 / 1e-39 AT4G14455 147 / 1e-46 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Potri.002G041500 [exp] 100 / 4e-28 AT3G58170 202 / 7e-69 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.005G221600 [exp] 99 / 7e-28 AT3G58170 206 / 4e-70 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021879 pacid=23158082 polypeptide=Lus10021879 locus=Lus10021879.g ID=Lus10021879.BGIv1.0 annot-version=v1.0 ATGGAGATGACGGAACAAGGAACGGAAGGAGGAAAGAAACAAGCGAAGCGAAGCGAATCGAATTCCTCTCAGGTTGGTTGTGCCAAAAGATTTGAGCTAA CTGATTCTCACTACTGCCCAGGCGGCGTAGCTGTTGGCTACTGGGCGCTATTTTGTGCACAGCTAACTGGTGACATACACGAGGAAGTAGAAACCCACAA CCGTCTGCTAGATCGAATGGGGAATGGCATGGATGTTTCGAGGGGCGTAATATCTGGAACCATGGACAGATTCAAAGCGGTATTTGAGAAGAAATCCAGT CGGAGAACATGTGTGCTTGCTGGGTTCTTCGTGCTCTCCTTTCTTGCTATGTATTACCTCATCAGGTAA
AA sequence Show only first row Show all	>Lus10021879 pacid=23158082 polypeptide=Lus10021879 locus=Lus10021879.g ID=Lus10021879.BGIv1.0 annot-version=v1.0 MEMTEQGTEGGKKQAKRSESNSSQVGCAKRFELTDSHYCPGGVAVGYWALFCAQLTGDIHEEVETHNRLLDRMGNGMDVSRGVISGTMDRFKAVFEKKSS RRTCVLAGFFVLSFLAMYYLIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10021879 [exp]	0	1
AT1G12400			Nucleotide excision repair, TF...		Lus10007001 [exp]	1.7	0.7162
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10004417 [exp]	9.3	0.6143
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10017299 [exp]	11.0	0.7150
AT4G26055			unknown protein		Lus10001708 [exp]	11.2	0.6441
AT5G63060			Sec14p-like phosphatidylinosit...		Lus10039952 [exp]	13.0	0.7146
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Lus10005796 [exp]	17.9	0.7011
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	20.2	0.7053
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	22.9	0.6786
AT2G48060			unknown protein		Lus10027981 [exp]	34.5	0.6037
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	36.9	0.6545

Compare expression of checked genes

Lus10021879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.