Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23150 808 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 804 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT1G04310 582 / 0 ERS2 ethylene response sensor 2 (.1) AT1G66340 472 / 2e-156 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 370 / 2e-118 ERS1 ethylene response sensor 1 (.1) AT5G35750 80 / 5e-15 AHK2 histidine kinase 2 (.1) AT1G27320 68 / 2e-11 AHK3 histidine kinase 3 (.1) AT2G01830 64 / 2e-10 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041159 [exp] 1479 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 1209 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 1208 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 872 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10042549 [exp] 862 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 858 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10022009 [exp] 857 / 0 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10020778 [exp] 462 / 4e-152 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 461 / 6e-152 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074300 [exp] 1100 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 1043 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.019G014300 [exp] 875 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.013G044100 [exp] 874 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.001G204200 [exp] 466 / 4e-154 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 462 / 2e-152 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 409 / 4e-133 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.014G164700 [exp] 78 / 1e-14 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 73 / 5e-13 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 71 / 2e-12 AT1G27320 1425 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10021880 pacid=23158041 polypeptide=Lus10021880 locus=Lus10021880.g ID=Lus10021880.BGIv1.0 annot-version=v1.0 ATGTTCAAATCATCAGCTCCTCCTGGGTTGCTGCTGCTACTGCTGCTATCTATCCTCTTCTTAGCATCCGTTTCTGCCAACGACAACAATGGCTTCCCTA GATGTAACTGCGACGAAGAGGAAGGTCAGTGGAGCATAGACAGCATCCTGGAATGCCAAAGGGTAGGAGATTTCTTGATAGCAGTAGCCTATTTCTCAAT TCCAATTGAGTTGCTCTACTTCATCAGCTGCTCCAACATTCCATTCAAATGGGTACTCGTAGAATTCATTGCCTTCATCGTTCTCTGCGGAATGACCCAC TTGCTCAACGGCTGGACCTATGGCCCCCACACTTTCCAGCTTATGGTTGCTGTCACAGTCTTCAAGATTCTAACCGCCTTAGTTTCATGTGCCACTGCCA TCACTCTCTTCAGCTTGATCCCTATGCTTCTCAAGGTTAAAGTCAGGGAATTCATGTTAAAAAAGAAAACTCGGGACTTGGGTAGGGAAGTTGGGATGAT TATGAGGCAGAGAGAAGCTGGATTGCATGTCAGAATGCTTACTCAGGAGATTCGAAAATCGCTCGATAGGCATACGATTCTGTACACTACCCTCGTCGAG CTTTCCAAGACCCTCGGGTTGCAGAATTGCGCGGTGTGGATGCCTAATGAGATGAGGACCGAGATGCATTTGACACACGAGCTGAATGGTGGGGAGAGTT GTGTGATGATACCGACATCGGATCCTGATGTTGCGAGGATTAAGGGAAGTGGTTCAGTGAACATCCTCCGACTTAACTCGCCTTTATCCGCTGCTAGCCT TGGGAAATCGGCCGAGGAGTCGTCGGGGCCAGTGGCTGCGATAAGAATGCCGATCCTTCGTGTTTGCAATTTCAAAGGCGGGACTCCCGAGATGATCCAG GCATGCTATGCCATATTGGTGTTGGTACTTCCGGGCGGTCATCGGTCTTGGAGCAATCAAGAGCTGGAGATAATCAAAGTAGTGGCCGATCAGGTGGCAG TTGCGCTATCCCATGCAGCTGTACTTGAAGAATCACAGATCATGAGGGAGAAATTAGAGGAGCAGAATCGAGCTTTGCAGCAAGCCAAGATGGACGCTAT GATGGCTAGTAAAGCTAGGAATTCCTTTCAGAAGGTAATGAGCGATGGAATGAAAAGACCGATGCATTCCGTTTCGGGGTTGATTTCCTTGTTGCAGGAT GAAAGTTTAGAGAGTGAGCAAAAGATTATTGTCGATACAATGATGAAAGCGAGCAATGTCTTGTCGATATTAATCAACGACGTGATGGGGATATCTACAA AGGGAGCCAGTGGGAGGTTTCCGGTGGAGGCCAACTCTTTCGGGTTGCATTCAATGATTACTGAAGCAGCTTGCCTCGCAAAGTGTTTGTGTGTTTATAA AGGATTTGGATTTACAATGGAAGTTGATAGGTCGTTGCCGGATCATGTCATGGGAGATGAGAGGAGGATCTTTCAGGTGATTCTGCATATGGTTGGGAAT TTGCTTGATGGGAATCGTAGAGGTGGCTCGGTTCTGTTTCGGGTTGTCATTGACCATGGGAGTCAAGAGAGGAATGATCAGAGATGGGGGGTGTGGAAGC AAAGTCCCTCGGATGGTCGTGTGTGCATAAGATTTGAAATTGGATTGACTTGTGCTGGTTCGGAACCGGAGGGATTCAGTTCAGCTATGCAGCTTGGTGG TAGAAGGTATACCAGTGATGGATTTGAGCAAGGGTTGAGCTTCACTGTCTGCAAAAAGCTTGTTCAGATGATGCAAGGGAACATCTGGGTATTCCCGAAC AACCAAGGTTTCGTCCAGAACATGGGACTCGTTCTACGATTCCAACTCCGTCAAACCATGGCAATCACCATAAGCGAACCGGGAGAATCTTCGGAGCATC ATCATCCGCCACATTCGAACTCGTTCTGCACGGGATTGCAAGTGGTCGTAGCAGAGTCGGACGATTTGAACAGAAGCGTTACGAAAAGGCTGCTAGAGAA GTTAGGGTGCTCGGTTACGGCCCTCTCATCAGGTTACGATTGCCTCAATGCCATATGCCAAGTCTCGTCTGCCTTCCAAGTCGTGCTCCTGGATCTTCAG CTGCCGGACTTGGACGGGTTCGAAGTTGCGGCCAAGATCAGAAAGTTCAGGAGCCGGAGTTGGCCGGTGATCCTAGCGATGACATCGAGCGGCGGGGAGG AAGATGGGTTGTGGGAGAAGTGTGTGCAGATGGGGATGAATGGGGTTATCAGGAAACCAATTTTGCTGCAAGGAATTGCCAATGAGCTACGGAGAGTGGT TCTGCAGGCAAACAGAGCGGTGTAA
AA sequence Show only first row Show all	>Lus10021880 pacid=23158041 polypeptide=Lus10021880 locus=Lus10021880.g ID=Lus10021880.BGIv1.0 annot-version=v1.0 MFKSSAPPGLLLLLLLSILFLASVSANDNNGFPRCNCDEEEGQWSIDSILECQRVGDFLIAVAYFSIPIELLYFISCSNIPFKWVLVEFIAFIVLCGMTH LLNGWTYGPHTFQLMVAVTVFKILTALVSCATAITLFSLIPMLLKVKVREFMLKKKTRDLGREVGMIMRQREAGLHVRMLTQEIRKSLDRHTILYTTLVE LSKTLGLQNCAVWMPNEMRTEMHLTHELNGGESCVMIPTSDPDVARIKGSGSVNILRLNSPLSAASLGKSAEESSGPVAAIRMPILRVCNFKGGTPEMIQ ACYAILVLVLPGGHRSWSNQELEIIKVVADQVAVALSHAAVLEESQIMREKLEEQNRALQQAKMDAMMASKARNSFQKVMSDGMKRPMHSVSGLISLLQD ESLESEQKIIVDTMMKASNVLSILINDVMGISTKGASGRFPVEANSFGLHSMITEAACLAKCLCVYKGFGFTMEVDRSLPDHVMGDERRIFQVILHMVGN LLDGNRRGGSVLFRVVIDHGSQERNDQRWGVWKQSPSDGRVCIRFEIGLTCAGSEPEGFSSAMQLGGRRYTSDGFEQGLSFTVCKKLVQMMQGNIWVFPN NQGFVQNMGLVLRFQLRQTMAITISEPGESSEHHHPPHSNSFCTGLQVVVAESDDLNRSVTKRLLEKLGCSVTALSSGYDCLNAICQVSSAFQVVLLDLQ LPDLDGFEVAAKIRKFRSRSWPVILAMTSSGGEEDGLWEKCVQMGMNGVIRKPILLQGIANELRRVVLQANRAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	1.0	0.9818
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	1.4	0.9248
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	1.7	0.8886
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	3.5	0.8830
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	4.9	0.8730
AT3G26000			Ribonuclease inhibitor (.1)		Lus10011378 [exp]	6.9	0.7960
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	8.4	0.8613
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	8.7	0.8764
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	10.0	0.8575
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	10.4	0.8588

Compare expression of checked genes

Lus10021880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.