Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14480 441 / 1e-151 Protein kinase superfamily protein (.1) AT5G14720 328 / 3e-105 Protein kinase superfamily protein (.1) AT1G79640 300 / 2e-94 Protein kinase superfamily protein (.1.2) AT4G10730 293 / 2e-91 Protein kinase superfamily protein (.1) AT4G24100 284 / 7e-88 Protein kinase superfamily protein (.1) AT1G70430 257 / 8e-79 Protein kinase superfamily protein (.1) AT1G23700 238 / 5e-73 Protein kinase superfamily protein (.1) AT3G15220 169 / 1e-45 Protein kinase superfamily protein (.1) AT1G53165 164 / 6e-44 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G69220 162 / 1e-42 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041162 [exp] 421 / 5e-147 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1) Lus10014542 [exp] 315 / 2e-99 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10032144 [exp] 300 / 2e-94 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10000416 [exp] 300 / 7e-94 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026108 [exp] 297 / 4e-93 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033230 [exp] 293 / 7e-91 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 291 / 2e-90 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10001677 [exp] 287 / 2e-87 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 284 / 4e-86 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G163800 [exp] 479 / 9e-166 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 339 / 5e-111 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 331 / 1e-108 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.001G349300 [exp] 319 / 2e-101 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 305 / 4e-96 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 303 / 3e-95 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G084700 [exp] 300 / 8e-94 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.003G146000 [exp] 293 / 3e-91 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 171 / 4e-46 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 166 / 2e-44 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021882 pacid=23157982 polypeptide=Lus10021882 locus=Lus10021882.g ID=Lus10021882.BGIv1.0 annot-version=v1.0 ATGGCACTTCCACAGCATGACCATCAAGATCCAACAACAAGGAAGCCTCAATACCCACTAGACTCAAACTCATACAAGATCATCGACGAGATTGGCATCG GAGTCAGCGCCGTGGTCTACAAGGCACTATGCATCCCCATGAACTCCTCCGTGGTAGCCATCAAGTCAATAAACCTCGACCAATCCCGCGCAGATTTCGA CACCATCCGGCGAGAGATCAAGACCATGACCCTCTTATCCCACCCCAACATCCTCGAATCGCACTGCTCGTTCACCGTTGACCGCTGCCTGTGGGTTGTG ATGCCCTTCATGTCGGCCGGTTCCTTGCAGTCCATAATCTCAACTTGTTTCCCTCAAGGATTTTCGGAGGCTTGCATTGCCGTGGTGCTCAAGGAAACCC TCCACGCGCTCTCTTACCTCCACAACCAGGGTCACTTGCACAGAGATATAAAGGCTGGGAACATTCTGATGGATTCTGATGGACACGTCAAGCTCGCGGA CTTTGGTGTTTCTGCGTCGCTTTATGAGCCGAATAATGGCCGCGGTGGGGGGTGTGGAGACGGCCGACAGCAGCAGATGATGCTCACTGATATGGCCGGG ACGCCCTACTGGATGGCGCCTGAGGTAATCCACTCGCACACAGGGTACAGCTTGAAAGCAGACATATGGTCTTTCGGAATCACCGCTCTAGAATTAGCCT ACGGATGCCCTCCTCTCTCACACTTGTCTCCTTCCAAGTCCCTGCTCATGAAGATCACCAAGAGGTTCCGTTTCTCCGACTACGAGAACAAGGCCGCCGT CAACGGAAAGAAGTTGTCCAAATCATTCAAGGAAATGGTTGGAGCCTGTCTGAATCAAGACCCATCCAAACGTCCTTCCGCGGATAAACTCCTCAAGCAC TGCTCCTTCTTCAAGAACTGCACCAAAGGGTCTGATTTCCTCGTCAAGAACATACTCAACGGCCTGCCTAGCGTTGAAGACCGGTACAAATTAGCAAGCT GCAGCAGCAGTACTGATCAGAATGATAATAATAATAATAATAATAATGTCGTGCAGCAGAAGGTGAGAAGGATCAGCGGGTGGAATTTCAATTTGGACTC TGTTTTCCCCACCGAGAATTTAATCAAGTACGAGTCGAATACGAATACAACTACGACTACGACGACGAGTACGGATCAGTCAGGGGGGATAAGTAGCGGG AGTAGTTCAGAGGAGTCGAGTGTGATGAGTTCGCCGCCAGGTGGGATGGAGGTTGATTCGATGATGGTGGGGAGTTTGGTGGTGTTGAGGAAGAGTTTGG ACGAGCAGAGGGAGAAAGTGGTGAATCTGATTGGGTTGTTGGGAGGGGAACAAGAAGAAGAAGTGAAAGCAGAGAGTACTGAAAAGCTGAGGATGGAGCT GGAGAAGGAGAAACAGAGGAGTTTTGAATTGGAGATGGAGCTTGGATTCCTTAAGCTTCTGCTTGTTTCTGCTGATTCCGATCAGTAA
AA sequence Show only first row Show all	>Lus10021882 pacid=23157982 polypeptide=Lus10021882 locus=Lus10021882.g ID=Lus10021882.BGIv1.0 annot-version=v1.0 MALPQHDHQDPTTRKPQYPLDSNSYKIIDEIGIGVSAVVYKALCIPMNSSVVAIKSINLDQSRADFDTIRREIKTMTLLSHPNILESHCSFTVDRCLWVV MPFMSAGSLQSIISTCFPQGFSEACIAVVLKETLHALSYLHNQGHLHRDIKAGNILMDSDGHVKLADFGVSASLYEPNNGRGGGCGDGRQQQMMLTDMAG TPYWMAPEVIHSHTGYSLKADIWSFGITALELAYGCPPLSHLSPSKSLLMKITKRFRFSDYENKAAVNGKKLSKSFKEMVGACLNQDPSKRPSADKLLKH CSFFKNCTKGSDFLVKNILNGLPSVEDRYKLASCSSSTDQNDNNNNNNNVVQQKVRRISGWNFNLDSVFPTENLIKYESNTNTTTTTTTSTDQSGGISSG SSSEESSVMSSPPGGMEVDSMMVGSLVVLRKSLDEQREKVVNLIGLLGGEQEEEVKAESTEKLRMELEKEKQRSFELEMELGFLKLLLVSADSDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	0	1
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	4.0	0.8704
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	4.9	0.8315
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	6.5	0.8670
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	7.4	0.8269
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	9.2	0.8576
AT1G06510			unknown protein		Lus10031457 [exp]	9.3	0.7235
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	9.8	0.7966
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	10.2	0.8575
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	10.7	0.8547
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	11.0	0.8296

Compare expression of checked genes

Lus10021882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.