Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14500 573 / 0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 532 / 0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G64720 344 / 8e-116 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 321 / 1e-105 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G13062 145 / 7e-39 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 130 / 1e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041166 [exp] 773 / 0 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10033247 [exp] 335 / 9e-112 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 327 / 2e-108 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008281 [exp] 259 / 3e-84 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033334 [exp] 115 / 5e-28 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10034791 [exp] 95 / 7e-21 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10000083 [exp] 64 / 2e-11 AT3G23080 122 / 6e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10015566 [exp] 54 / 4e-08 AT1G64720 105 / 5e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162600 [exp] 605 / 0 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.010G076500 [exp] 591 / 0 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.015G005000 [exp] 362 / 1e-121 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G151500 [exp] 359 / 7e-121 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 349 / 9e-117 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.001G450100 [exp] 340 / 2e-113 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.007G002700 [exp] 125 / 9e-32 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 124 / 2e-31 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021883 pacid=23157988 polypeptide=Lus10021883 locus=Lus10021883.g ID=Lus10021883.BGIv1.0 annot-version=v1.0 ATGGACGCGGCTTTCTTCTTCGATCTGATGGATTTCTTCAAGGAACCCTCCATCACCGAAACATTCGTCGATATTTTACTCTGCGCCGTCCCCATATGGC TAGCGGTGATGATCGGTCTCGTCATCGGTTGGTCATGGCGGCCTAGGTGGACTGGATTGGTGTTCCTAGGGTTGCGTAGCAAGTTTAGGTATCTATGGAC GTTGCCGCCGGGGTTTGGAGCGCGTCGACTCTGGCTAGCTTTTACGGCTCTGTCGGCTTTCTCCGTCTGCCGCGCGATCTGGTCCGATTTTAGAGGGAAA AGGGAAAAATCAGCTGCTGCTGCTGTGGCGTCTGCTTCGTCTCTTTCTCCAGATTCAGCGGCTACAAGCTCCGAGGGATTTTCTCATTCTGCTAGCTCCG CATGTGAAGGGAGGAAGGAGCTTGTAACAGACAATGACTTGGAACACCTACTTTTTTTGCTTGAAGGGAAGGACAGTAAAATGGACTGGCAATGTATTAT GGAAAAGACTCCACCCAACATGTCATATCAAGCTTGGCGCTATGAACCTCAGACAGGTCCTACTGTACTACGTAGCCGAACTGTGTTTGAGGATGCGACT CCCGACTTGGTTAAAGATTTCTTCTGGGATGATGAATTCCGGCCTAAATGGGATCCAATGCTTGGATACATCAAGATCCTGGATGAATGTTCTTCTACAG GAATCAGCATTTCTCATTGGATAAAAAAGTTTCCATTTTTCTGTAGTGATAGAGAATACATCATTGGAAGAAGAATATGGGAGGCTGGGAAGTCATACTA TTGCGTTACTAAGGGGGTGCCATACCCAGGCTTGCAGAAGCGAGACAAGCCAAGACGTGTGGAGCTTTATTTCTCTGGTTGGGTGATTAGGCCTGTTGAA TCTCGGAAAGGTGATGGGCAAATGACTGCGTGTGAAGTAATTCTGGTGCATTATGAAGACATGGGTATCCCCAAAGACGTGGCGAAGATAGGAGTTCGCC ATGGAATGTGGCCAGCTGTGAAGAAACTGCATTCTGGGATGCGATCATACCAGAATGCCAGGAAAGCAGATTCCGCGTTGTCCCGTTGTGCTCTAATGGC CAAGATCACCACAAAAGTAACTCTGGACAAGAACATTGAATCGGAGGATTATACGGACGAAGGAGGAAGCAAAATCAGATTGGTGGAAGGGAATGAAAGG CGAAAAGAACGTGGAATCAATTGGAAATGGATTTTCTTAGGTGGAGCAGCAGCTGTGGTATGCGGAGTTCGATCAGGGGCAATCGGGAAGGCTTTGTTAG TTGGTGCGGGGCAGAGAATTGCCCGGAGGTGA
AA sequence Show only first row Show all	>Lus10021883 pacid=23157988 polypeptide=Lus10021883 locus=Lus10021883.g ID=Lus10021883.BGIv1.0 annot-version=v1.0 MDAAFFFDLMDFFKEPSITETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRYLWTLPPGFGARRLWLAFTALSAFSVCRAIWSDFRGK REKSAAAAVASASSLSPDSAATSSEGFSHSASSACEGRKELVTDNDLEHLLFLLEGKDSKMDWQCIMEKTPPNMSYQAWRYEPQTGPTVLRSRTVFEDAT PDLVKDFFWDDEFRPKWDPMLGYIKILDECSSTGISISHWIKKFPFFCSDREYIIGRRIWEAGKSYYCVTKGVPYPGLQKRDKPRRVELYFSGWVIRPVE SRKGDGQMTACEVILVHYEDMGIPKDVAKIGVRHGMWPAVKKLHSGMRSYQNARKADSALSRCALMAKITTKVTLDKNIESEDYTDEGGSKIRLVEGNER RKERGINWKWIFLGGAAAVVCGVRSGAIGKALLVGAGQRIARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10021883 [exp]	0	1
AT4G14500			Polyketide cyclase/dehydrase a...		Lus10041166 [exp]	1.0	0.9136
AT5G64460			Phosphoglycerate mutase family...		Lus10007093 [exp]	5.7	0.8529
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10007071 [exp]	6.8	0.8101
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10024339 [exp]	9.3	0.8613
AT4G14600			Target SNARE coiled-coil domai...		Lus10041130 [exp]	9.6	0.7709
AT5G43830			Aluminium induced protein with...		Lus10041181 [exp]	12.5	0.8002
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	12.6	0.8504
AT4G13540			unknown protein		Lus10023697 [exp]	14.0	0.7950
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	22.5	0.8539
AT4G28660		PSB28	photosystem II reaction center...		Lus10024959 [exp]	25.0	0.8308

Compare expression of checked genes

Lus10021883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.