Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06750 402 / 2e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G30630 402 / 3e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G04280 398 / 2e-134 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041167 [exp] 819 / 0 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022217 [exp] 449 / 4e-157 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021226 [exp] 447 / 6e-156 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033855 [exp] 405 / 3e-137 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021884 [exp] 388 / 1e-133 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014744 [exp] 393 / 3e-132 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162000 [exp] 467 / 7e-162 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G220000 [exp] 448 / 1e-154 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G043000 [exp] 440 / 4e-151 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162400 [exp] 438 / 2e-150 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06414 [flax] [poplar] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Lus10021885 pacid=23158047 polypeptide=Lus10021885 locus=Lus10021885.g ID=Lus10021885.BGIv1.0 annot-version=v1.0 ATGGCTACCTCGTCTCTTGTTTTCGTCGCCGCCGCCACCGCCGAATACTACCGGTGGAGTTCCAATAACAGCAGCACAGGACTCATCCCGAGGGCAGACG AAGCAATAGACGGCAGGCGGAAGGTGGAGAGATTCTCTCACTATGTGGCCAGGCAACTTGGGCTCTCGGATCCTAGCGAGTTCCCGCAGCTCTGCAAGCT AGCCTACGAATACCTAACCAGCAAATCCGCCGCTGGATGCGAAGACGACATCTACGATTACTTTGCTGGATGCGAAGGCGAGTCCAGCGGTCGGGCCAAA CAGCTTTGCGGAATGCTCGTGCTGGAGCTGGAGAGGGAGCGAAGATTTGAGAGAGTGAGTAACAGCCTGAAGATAACGAGGGTGTTTTCCAACCTAGTAG AGGAAATGAAAGCCATCCGGAGAAGAGAGTCTCACGTCACCGACGAAGTCATCGCACCGGAGCTGGGAGTCAGTGATAGGAGACCCGTGCTTCTGTTCAT GGGCGGCGGTATGGGTGCCGGCAAAAGCACTGTCATCAATGACATCCTCAAAGAATCGTTTTGGCGAGGGGCAGCCGCTAACGCAGTCGTAGTGGAGGCA GATGCATTCAAAGAATCCGATGTTATTTACAAAGCTCTAAACGCCACCGGCCACCACGACGACATGCTTCGAACGTCTGAATTGGTTCACCAAGCGTCAA TTGATGCGGCATCGTCTCTGCTAGTGACAGCCCTTAACGAAGGGCGAGACGTGATAATGGACGGTACGCTTTCATGGGAGCCATTCGTTGAGCAGACAAT CCAGATGGCACGCGATGTCCACAACCGACGTTACCGTATGGGTGTGGGTTATAAGGTTGACGCAGACGGCACCAAAGTCACGGAGAATTACTGGGAACCA GTAAACGACGATGATGACGACAAATTACTGCACTTGCCTACTACTACTAACAGGAGGGCGTACAGAATCGAGATGGTCGGAGTAGTGTGCGACGCATATC TAGCGGTGGTCAGGGGAATCAGGAGAGCTATAGTGACGGGAAGAGCAGTGAGGGTGAATTCGCAGCTAATCTCACATAAGAGATTCGCAAATGCGTTTCC CAACTACTGTCAGCTAGTGGATAACGCTAGGCTTTACAGCACAAACAGTTTGAATGGCCCGCCAAAGCTGATAGCGACGAAGGATGAGGATAACAAGATG TGGATTGACCAAGGCGATTTCAAATGGTTGAGTAATGTGGGTAGGTTGAACCCGAGAGCAGAATCGGTGCACGAGTTGTACAGTGACCCAGATCTCATTG ATGAAGCCGGTTCGGTCTGGAAAGAAGTGGTCTTTAACCCTTCGAGACCCAGCATTCAGGCAGAGCTAAGAACGACTATGAAGCGGATTGAAACTTAA
AA sequence Show only first row Show all	>Lus10021885 pacid=23158047 polypeptide=Lus10021885 locus=Lus10021885.g ID=Lus10021885.BGIv1.0 annot-version=v1.0 MATSSLVFVAAATAEYYRWSSNNSSTGLIPRADEAIDGRRKVERFSHYVARQLGLSDPSEFPQLCKLAYEYLTSKSAAGCEDDIYDYFAGCEGESSGRAK QLCGMLVLELERERRFERVSNSLKITRVFSNLVEEMKAIRRRESHVTDEVIAPELGVSDRRPVLLFMGGGMGAGKSTVINDILKESFWRGAAANAVVVEA DAFKESDVIYKALNATGHHDDMLRTSELVHQASIDAASSLLVTALNEGRDVIMDGTLSWEPFVEQTIQMARDVHNRRYRMGVGYKVDADGTKVTENYWEP VNDDDDDKLLHLPTTTNRRAYRIEMVGVVCDAYLAVVRGIRRAIVTGRAVRVNSQLISHKRFANAFPNYCQLVDNARLYSTNSLNGPPKLIATKDEDNKM WIDQGDFKWLSNVGRLNPRAESVHELYSDPDLIDEAGSVWKEVVFNPSRPSIQAELRTTMKRIET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30630			P-loop containing nucleoside t...		Lus10021885 [exp]	0	1
AT2G30630			P-loop containing nucleoside t...		Lus10021884 [exp]	1.0	0.9067
AT2G30630			P-loop containing nucleoside t...		Lus10041167 [exp]	2.0	0.8928
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	8.2	0.8393
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	10.5	0.8780
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	10.9	0.8587
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	11.3	0.8551
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	12.6	0.8618
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	13.3	0.8431
AT5G57910			unknown protein		Lus10036591 [exp]	13.7	0.8361
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	15.2	0.8677

Compare expression of checked genes

Lus10021885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.