Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09500 240 / 7e-80 Ribosomal protein S19 family protein (.1) AT5G09510 231 / 3e-76 Ribosomal protein S19 family protein (.1.2) AT1G04270 229 / 2e-75 RPS15 cytosolic ribosomal protein S15 (.1.2) AT5G09490 226 / 2e-74 Ribosomal protein S19 family protein (.1) AT5G43640 216 / 1e-70 Ribosomal protein S19 family protein (.1) AT5G63070 186 / 9e-59 Ribosomal protein S19 family protein (.1) AT1G33850 75 / 6e-17 Ribosomal protein S19 family protein (.1) AT1G04260 77 / 1e-16 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) AT1G55190 49 / 6e-07 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13720 49 / 9e-07 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041168 [exp] 362 / 2e-126 AT5G09510 260 / 6e-89 Ribosomal protein S19 family protein (.1.2) Lus10033856 [exp] 266 / 6e-90 AT5G09510 265 / 9e-93 Ribosomal protein S19 family protein (.1.2) Lus10018777 [exp] 264 / 3e-89 AT5G09510 266 / 3e-93 Ribosomal protein S19 family protein (.1.2) Lus10007469 [exp] 238 / 6e-79 AT5G09500 250 / 6e-87 Ribosomal protein S19 family protein (.1) Lus10026127 [exp] 218 / 3e-71 AT5G09500 244 / 4e-84 Ribosomal protein S19 family protein (.1) Lus10024865 [exp] 216 / 8e-71 AT5G09500 222 / 4e-76 Ribosomal protein S19 family protein (.1) Lus10008692 [exp] 136 / 1e-39 AT5G09490 162 / 2e-52 Ribosomal protein S19 family protein (.1) Lus10027711 [exp] 44 / 3e-05 AT5G47320 123 / 3e-36 ribosomal protein S19 (.1) Lus10014747 [exp] 44 / 7e-05 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G076900 [exp] 255 / 9e-86 AT5G09510 267 / 2e-93 Ribosomal protein S19 family protein (.1.2) Potri.002G043200 [exp] 252 / 2e-84 AT5G09500 266 / 5e-93 Ribosomal protein S19 family protein (.1) Potri.005G219700 [exp] 251 / 4e-84 AT5G09500 266 / 6e-93 Ribosomal protein S19 family protein (.1) Potri.008G161901 [exp] 103 / 6e-28 AT5G09510 130 / 4e-41 Ribosomal protein S19 family protein (.1.2) Potri.005G055534 [exp] 81 / 2e-18 AT1G04270 77 / 1e-18 cytosolic ribosomal protein S15 (.1.2) Potri.005G055401 [exp] 76 / 2e-17 AT1G04270 97 / 3e-27 cytosolic ribosomal protein S15 (.1.2) Potri.010G077700 [exp] 73 / 4e-15 AT1G04260 122 / 2e-35 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) Potri.003G123750 [exp] 67 / 2e-14 AT1G04270 67 / 4e-16 cytosolic ribosomal protein S15 (.1.2) Potri.004G074201 [exp] 52 / 2e-08 AT5G09500 52 / 1e-09 Ribosomal protein S19 family protein (.1) Potri.011G074301 [exp] 44 / 7e-06 ATCG00820 168 / 2e-56 ribosomal protein S19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00203 [flax] [poplar] Ribosomal_S19 Ribosomal protein S19 PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10021886 pacid=23158025 polypeptide=Lus10021886 locus=Lus10021886.g ID=Lus10021886.BGIv1.0 annot-version=v1.0 ATGGTGCGCATTGCCTCCATCGCCGGCACCTCTTCCACCGCCCCTTTGACGCCGACCATCACACCTCCCGGTAATCTCCCAACTCCCCCTGCTGTAGTGA ACACCACTGTTCACGCGGCGGATGTGGAAGCAGACGTTGCTGTTCCTGGACAGCCGAAGAAGAGAACGTTTAAGAAGTTTAGCTTCAGAGGTGTGGATTT GGACGCACTGCTCGATATGTCCACTGATGATCTTGTTAAGCTCTTCACTGCTCGTGCCCGTAGAAGGTTCCAGAGAGGGCTGACCAGGAAGCCTATGGCT TTGGTCAAGAAGCTGCGCAAGGCTAAAAGGGAGGCACCAGCAGGGGAAAAGCCAGAGCCAGTGAGGACTCACCTCCGCAATATGATCATTGTCCCTGAAA TGATCGGGAGCGTGATTGGTGTGTACAATGGGAAAACATTCAACCAAGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTTTCCATTTC ATACAAGCCTGTGAAGCACGGTAGGCCTGCTACGGCCAGTCTTTCTTACTTCACCGCCGTCGACATCCCCTCCCCAATCTCCTCCGCCATAACTAGGGTT ACTCAGAACCTGGCCTACTTCCGAGCCAATTACGCTGTTATCATCCTCATCGTCTTTCTCCTCAGCCTGATTACCCGCCCTTTAGCTTTGATCGCCTTCT TCATCGCGCTCCTTGCTTGGATCGTCCTCTTCTTCGCCCGAGACGAGCCGCTCTCTATTTTCGGGTTCGAGGTCAACGATTGGGCCGTTCTGGCGGCGCT TTTACTTGCCTCGGTCGTGATTTTGTCGGTCGCCGGGATCTGGGTTACTGTGATCGTTGCCGGATTGGTTGCTGCCGGATTGGTGGTTTTGCACGCCGCG TTGAGGAGCACGGATGATTTGGTGGCCAACGAATTCGAGGCATCCCCGTACGGAGACTTGCTCTCCGAAGACGATAGTCCGGAAGCCGGCGGATCTTACT CCCAGATTTGA
AA sequence Show only first row Show all	>Lus10021886 pacid=23158025 polypeptide=Lus10021886 locus=Lus10021886.g ID=Lus10021886.BGIv1.0 annot-version=v1.0 MVRIASIAGTSSTAPLTPTITPPGNLPTPPAVVNTTVHAADVEADVAVPGQPKKRTFKKFSFRGVDLDALLDMSTDDLVKLFTARARRRFQRGLTRKPMA LVKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPATASLSYFTAVDIPSPISSAITRV TQNLAYFRANYAVIILIVFLLSLITRPLALIAFFIALLAWIVLFFARDEPLSIFGFEVNDWAVLAALLLASVVILSVAGIWVTVIVAGLVAAGLVVLHAA LRSTDDLVANEFEASPYGDLLSEDDSPEAGGSYSQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09500			Ribosomal protein S19 family p...		Lus10021886 [exp]	0	1
AT3G11500			Small nuclear ribonucleoprotei...		Lus10021342 [exp]	1.0	0.9281
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10011776 [exp]	1.4	0.9274
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	4.6	0.9136
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	6.6	0.9120
AT3G11500			Small nuclear ribonucleoprotei...		Lus10017019 [exp]	7.7	0.9015
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	8.2	0.8635
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	10.2	0.8681
AT4G31460			Ribosomal L28 family (.1)		Lus10028995 [exp]	11.2	0.8512
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	12.1	0.8249
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10043429 [exp]	14.4	0.7860

Compare expression of checked genes

Lus10021886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.