Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64560 509 / 0 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09690 465 / 7e-164 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT5G09710 285 / 3e-94 Magnesium transporter CorA-like family protein (.1) AT3G58970 280 / 2e-90 MRS2-4, MGT6 magnesium transporter 6 (.1) AT1G80900 279 / 3e-90 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT1G16010 279 / 4e-90 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT5G09720 269 / 2e-88 Magnesium transporter CorA-like family protein (.1) AT3G19640 257 / 3e-81 MRS2-3, MGT4 magnesium transporter 4 (.1) AT2G03620 227 / 2e-70 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT4G28580 205 / 7e-62 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008803 [exp] 578 / 0 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 541 / 0 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10024860 [exp] 414 / 9e-144 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10014353 [exp] 278 / 1e-89 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026063 [exp] 276 / 5e-89 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10015459 [exp] 265 / 1e-84 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10037081 [exp] 220 / 2e-68 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10001373 [exp] 209 / 2e-64 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10041169 [exp] 172 / 9e-52 AT5G64560 205 / 8e-66 magnesium transporter 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161400 [exp] 550 / 0 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 547 / 0 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.003G183600 [exp] 280 / 1e-90 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G043200 [exp] 279 / 5e-90 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.006G081700 [exp] 260 / 6e-83 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.008G096200 [exp] 239 / 5e-75 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 230 / 1e-71 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.007G098200 [exp] 223 / 6e-69 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.009G086300 [exp] 163 / 9e-46 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098000 [exp] 156 / 2e-43 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10021887 pacid=23158060 polypeptide=Lus10021887 locus=Lus10021887.g ID=Lus10021887.BGIv1.0 annot-version=v1.0 ATGGCGGGGGACGTCTCCGTTGTTGTTCCGGCGGCCCCTGCAGCTGTGGTGGTCGCTGCTGCCGTGAAGAAGAAGACTCAGCCGGCGTTGAGTTGGATTC TCGTCGATTCCACCGGCCAAGGCACCCTCTTAGACGCCGACAAGCATGCAATCATGCACCGAGTCCACATTCACGCCCGCGATCTCCGTATTCTCGATCC CTTGCTTTCTTACCCTTCTACTATTCTCGGCCGTGAGAGGGCCATTGTTTTGAACTTGGAGTACATCAAAGCGATTATCACTGCAGAGGAGGTATTGCTG AGAGATCCAGCGGATGGAAATGTTGTACCTGTTGTTGAGGAGCTTCGGAGACGATTACCACTTGCAAATGACACTCACCAAGAAGATCAAGCAAATGGAA AAAGTCATGGGACCCAGAAAACTGATGCCGAAGGGGTTGAAGAGGACGAATCACCTTTCGAATTCCGTGTTCTGGAGGTTGCTTTGGAATTCATTTGTAG CTTTCTAGCTGCACGTACAACAGAGTTAGAGACTGCTGCTTATCCGGCATTGGATGAACTTACCTCCAAGATTAGCAGCCGCAATTTGGATAGAGTTCGT AAACTGAAGAGTGCCATGACAAGATTGACTGCTCGAGTTCAGAAAGTCCGGGATGAGCTTGAACAGTTATTGGATGATGATGATGATATGGCTGACCTTT ACTTGTCGAGAAAGTTGGCTGGTGCTACTTCACCAGTTAGTGCCTCAGGTGTCAATTGGTTTTCTGCTTCTCCTACAATAGGATCTAAAATCTCTAGGGC AAGCAGAGCAAGCTTGGCTACAGTTCGTGGTGATGAGAATGATGTTGAGGAGCTTGAAATGTTATTAGAGGCTTACTTTATGCAAATTGATGGCACATTG AACAAATTAACTACGTTGCGAGAATACATTGATGATACAGAGGATTACATTAATATTCAGCTTGACAACCACAGAAACCAGCTTATCCAGTTGGAGTTAT TTTTAAGTTCGGGCACAGTGTGTTTGTCAATATATTCTTTGGTGGCCGGGATATTCGGCATGAATATACCTTACACGTGGAACGAGGGCTATGGTTCCGT ATTCAAATGGGTGGTGATCTTAACAGGGATATTCTGCGCACTTGTATTCCTGGGAATCATGTCCTATGCTCGCTACAAGGGCTTGGTTGGATCTTGA
AA sequence Show only first row Show all	>Lus10021887 pacid=23158060 polypeptide=Lus10021887 locus=Lus10021887.g ID=Lus10021887.BGIv1.0 annot-version=v1.0 MAGDVSVVVPAAPAAVVVAAAVKKKTQPALSWILVDSTGQGTLLDADKHAIMHRVHIHARDLRILDPLLSYPSTILGRERAIVLNLEYIKAIITAEEVLL RDPADGNVVPVVEELRRRLPLANDTHQEDQANGKSHGTQKTDAEGVEEDESPFEFRVLEVALEFICSFLAARTTELETAAYPALDELTSKISSRNLDRVR KLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGATSPVSASGVNWFSASPTIGSKISRASRASLATVRGDENDVEELEMLLEAYFMQIDGTL NKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWNEGYGSVFKWVVILTGIFCALVFLGIMSYARYKGLVGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	0	1
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	3.0	0.8669
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10007862 [exp]	4.0	0.8669
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10024279 [exp]	4.2	0.8378
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10000573 [exp]	7.2	0.8730
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	11.3	0.8697
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	15.1	0.7895
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10015843 [exp]	19.1	0.8498
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	22.8	0.8533
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	24.3	0.8392
AT2G27770			Plant protein of unknown funct...		Lus10023869 [exp]	26.2	0.8317

Compare expression of checked genes

Lus10021887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.