Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 224 / 3e-65 Protein kinase superfamily protein (.1) AT2G23770 201 / 6e-57 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 197 / 1e-55 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT1G51940 196 / 7e-55 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT4G02010 194 / 9e-54 Protein kinase superfamily protein (.1) AT1G10620 187 / 3e-51 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G24030 179 / 3e-51 Protein kinase superfamily protein (.1.2) AT3G24550 184 / 9e-51 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70460 185 / 1e-50 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 184 / 3e-50 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041171 [exp] 724 / 0 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10039406 [exp] 581 / 0 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10000577 [exp] 235 / 3e-69 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 236 / 4e-69 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10019661 [exp] 228 / 8e-67 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 220 / 1e-63 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10030022 [exp] 215 / 2e-62 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10019662 [exp] 207 / 2e-61 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1) Lus10037586 [exp] 212 / 1e-60 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160600 [exp] 694 / 0 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 677 / 0 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 312 / 5e-99 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 248 / 3e-74 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.014G040000 [exp] 247 / 4e-74 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 238 / 2e-70 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160501 [exp] 218 / 2e-67 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 228 / 8e-67 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 221 / 7e-64 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 216 / 2e-62 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10021889 pacid=23158074 polypeptide=Lus10021889 locus=Lus10021889.g ID=Lus10021889.BGIv1.0 annot-version=v1.0 ATGATCTCAAAACCGAGCAACATTTCCGATCCATCCACAACACTAACCCCGAACCAGCCACTCTTCGTCCCGTTAACCTGTTCCTGCAACACCATCAATT CCACCTTCAGCATATCTTCTGCAAACATGAACTACACTATCAAATCAGGGGACACTTTCTGGTCAGTCTCCACAGTGTCTTTCCAGAACCTCACCACTTA CCCATCCGTCGAAGTCGTAAACCCTAACCTCGTCCCCGCCAAGCTCGAAATCGGGGTCAACGCCGTTTTCCCCATTTTCTGCAAGTGTCCTGATCAGACC GAGAGAGAAACCGATCAAATCAATTCCTTTGTTTCTTACGTTTTCCAGCCTTCCGATAATCTGTCCACAGTGGCTTCAACGTTTGGGGTTTCGCTGAAAT CGATTGTTAATGGGAACGATGTAAAGCCTCTGGACACGATATTCATTCCCGTGAATAGACTGCCGATTCTGAGGCAGGGGAATCCGAATTCGACTTCGAA TTCGAATTCCTCTGCTTCCTCGTCGTCTTCTACGGAGAGGAAAGGTTTGATGATAGGATTGGTTGCAGGGATTGGGGTTTGTCTGGGTTTGCTGGTTTTG GTCCTTGTGAGTTGGATTCACAGGGAGAGGAGGTTTGGGAAAGGGATGGATGGGGAGAAGAGGAGGCGGGAAGTTTATAACAAGGAAGGAGGAAGAGGGG AAAAAGGGATGGAGGAAATGGAGGAGAATGTAATGGCGGATGTGTCAGAGTGCTTGGATAAGTATAGGGTGTTTAAGATGGAGGAGCTGAAAGAAGCTAC AGATGGGTTTGAGGAGGAGTGTGCGATTGAAGGGTCTGTTTATAAGGGGAAGATTGGTGGAGTTGAGTATGCTATCAAGAAGATGAAGTGGAATGCCCGG GAAGAGCTCAAGATCTTGCAAAAGGTCAACCATGGCAATTTAGTCCAACTAGAAGGCTTCTGCATCGACTCTCAAGATGCCGATTGCTACCTAGTCTACG AATTCATTGAAAATGGCTCGCTCCACTCCTGGCTCCACACCAACAAGACCAAAAGGTTGAGTTGGAAAACAAGGGTCCGAATCGCCATCGACGTAGCGAA CGGCCTCCAGTACATCCACGAGCACACTAGGCCAAGAGTTGTACACAAGGACATCAAAGCCGTCAACATCCTCCTCGACACGAACATGAGGGCTAAAATT GCCAACTTCGGGTTGGCCAAATCGGGCTGCAACGCCATAACGATGCACATCGTGGGGACCCAGGGCTACATCGCGCCTGAGTACATGGCTGACGGGATTG TCTCCACCAAGATGGACGTGTTTGCTTTCGGAGTGGTTCTGCTCGAGCTCGTCTCCGGGAAGGAGGCCAGTGACGACGAAGGTAATGTGTTGTGGGAGGA AGTCGACGAGATTATGATCGAAGGGAATGTGAGAAGTTGGGTTGATGAAGCTCTTATGGAGGAGTCGTATCCGATTGAGAGCATACTGAATGTGATGACG GTGGCGGCTGCTTGTGTGGATATTGATCCGGGGAAGAGACCGAGCATGATGGATGTTGTGTATGCTCTGTGTCGGAGTGATGAGTTGTTTTTTGATGTTG CGGAGGAGGGTCGGGGGTTGTCCAATTCCAAGGTGACTGTTAGATAA
AA sequence Show only first row Show all	>Lus10021889 pacid=23158074 polypeptide=Lus10021889 locus=Lus10021889.g ID=Lus10021889.BGIv1.0 annot-version=v1.0 MISKPSNISDPSTTLTPNQPLFVPLTCSCNTINSTFSISSANMNYTIKSGDTFWSVSTVSFQNLTTYPSVEVVNPNLVPAKLEIGVNAVFPIFCKCPDQT ERETDQINSFVSYVFQPSDNLSTVASTFGVSLKSIVNGNDVKPLDTIFIPVNRLPILRQGNPNSTSNSNSSASSSSSTERKGLMIGLVAGIGVCLGLLVL VLVSWIHRERRFGKGMDGEKRRREVYNKEGGRGEKGMEEMEENVMADVSECLDKYRVFKMEELKEATDGFEEECAIEGSVYKGKIGGVEYAIKKMKWNAR EELKILQKVNHGNLVQLEGFCIDSQDADCYLVYEFIENGSLHSWLHTNKTKRLSWKTRVRIAIDVANGLQYIHEHTRPRVVHKDIKAVNILLDTNMRAKI ANFGLAKSGCNAITMHIVGTQGYIAPEYMADGIVSTKMDVFAFGVVLLELVSGKEASDDEGNVLWEEVDEIMIEGNVRSWVDEALMEESYPIESILNVMT VAAACVDIDPGKRPSMMDVVYALCRSDELFFDVAEEGRGLSNSKVTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	0	1
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	2.2	0.8900
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	7.1	0.8559
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	7.9	0.8976
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	8.0	0.8731
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	9.9	0.8937
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	11.7	0.8947
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	16.0	0.8910
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	16.2	0.8822
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10009480 [exp]	21.2	0.8621
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	21.2	0.8099

Compare expression of checked genes

Lus10021889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.