Plant FIBer expression Database

Lus10021890 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43750 238 / 3e-80 PnsB5, NDH18 Photosynthetic NDH subcomplex B 5, NAD(P)H dehydrogenase 18 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041171
[exp]
288 / 1e-94 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G078800
[exp]
247 / 2e-83 AT5G43750 241 / 4e-81 Photosynthetic NDH subcomplex B 5, NAD(P)H dehydrogenase 18 (.1)
PFAM info
Representative CDS sequence
>Lus10021890 pacid=23157994 polypeptide=Lus10021890 locus=Lus10021890.g ID=Lus10021890.BGIv1.0 annot-version=v1.0
ATGGCGGCTTTATGCCTGTCCTTTACTTCCTCTGCTTCATTACCCAGAATCACACCAACAAAATCTACGCAATTCGCCATTAGTAAGAGCGTTCATCTCT
CGAACCATAGCAGTCAAAGTGGCAGCAGAAGCTGGACGAGTCGACTCCGAGCTGCTGGGCTGTCAGAGATCGAGCCCGATCTCAACGAGGATCCAGTCGA
CATCTGGCGCACTCCTGGAATCGACCCAGAAGATTTTGAGTACGGAATCTACGATGGGCATCATACTTACTTCGAAACCGGGGAGGACGAAGGAAGCTTT
TGGGGTGCCATTGCCGACGACATCAAAGGTGTAGGAGCTCCCACCGGGTTTCAAGGAATCATATCGTGGCTTTTCCTACCAGCAGTGTTCGCTGGGATGT
ACTACCATATTCCTGGCGAGTTACTGTTCGGCGGGGCAGCACTATTCGCGACGGTGTTCGTGATAATAGAGATGGACAAGCCGGACATGCCCCACAACTT
CGAGCCCCAAATCTACAACATGGACAGAGCGGCGCGTGACAAGTTGATCAGCGATTACAACTCCATGAGCATATGGGACTTCAATGCCAAATACGGCGAA
CTCTGGGATTTCACCATCAAGAGGAATGACCTATCCGACTTCGGTGGCTAA
AA sequence
>Lus10021890 pacid=23157994 polypeptide=Lus10021890 locus=Lus10021890.g ID=Lus10021890.BGIv1.0 annot-version=v1.0
MAALCLSFTSSASLPRITPTKSTQFAISKSVHLSNHSSQSGSRSWTSRLRAAGLSEIEPDLNEDPVDIWRTPGIDPEDFEYGIYDGHHTYFETGEDEGSF
WGAIADDIKGVGAPTGFQGIISWLFLPAVFAGMYYHIPGELLFGGAALFATVFVIIEMDKPDMPHNFEPQIYNMDRAARDKLISDYNSMSIWDFNAKYGE
LWDFTIKRNDLSDFGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G43750 PnsB5, NDH18 Photosynthetic NDH subcomplex... Lus10021890
[exp]
0 1
AT2G33580 Protein kinase superfamily pro... Lus10041171
[exp]
1.0 0.9731
AT5G38660 APE1 acclimation of photosynthesis ... Lus10017574
[exp]
2.0 0.9644
AT5G13720 Uncharacterised protein family... Lus10019743
[exp]
2.2 0.9569
AT3G15850 JB67, FADB, ADS... FATTY ACID DESATURASE B, fatty... Lus10011488
[exp]
2.4 0.9521
AT1G73110 P-loop containing nucleoside t... Lus10041627
[exp]
3.0 0.9642
AT3G05625 Tetratricopeptide repeat (TPR)... Lus10031474
[exp]
3.3 0.9377
AT1G16880 ACR11 ACT domain repeats 11, uridyly... Lus10033395
[exp]
3.7 0.9481
AT2G03420 unknown protein Lus10037118
[exp]
4.5 0.9408
AT3G47070 unknown protein Lus10005866
[exp]
4.5 0.9596
AT1G16880 ACR11 ACT domain repeats 11, uridyly... Lus10034852
[exp]
8.6 0.9191

Lus10021890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.