Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23020 281 / 6e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G73710 144 / 6e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46580 83 / 3e-17 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16390 73 / 6e-14 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39980 72 / 1e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 71 / 3e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74750 69 / 1e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35130 64 / 6e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G18900 64 / 7e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT5G12100 63 / 1e-10 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041172 [exp] 598 / 0 AT3G23020 953 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004555 [exp] 86 / 5e-18 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 83 / 3e-17 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 74 / 4e-14 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038788 [exp] 72 / 1e-13 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10041429 [exp] 72 / 2e-13 AT5G39980 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034342 [exp] 71 / 3e-13 AT5G39980 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 69 / 1e-12 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035735 [exp] 69 / 2e-12 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G078900 [exp] 338 / 2e-109 AT3G23020 1046 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G144800 [exp] 149 / 9e-40 AT1G73710 1206 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G089600 [exp] 84 / 1e-17 AT5G46580 986 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G006800 [exp] 75 / 9e-15 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.017G075700 [exp] 71 / 3e-13 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G005100 [exp] 70 / 5e-13 AT4G30825 1121 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G019000 [exp] 70 / 6e-13 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G013300 [exp] 67 / 4e-12 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G123600 [exp] 67 / 5e-12 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G118500 [exp] 65 / 2e-11 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021891 pacid=23158072 polypeptide=Lus10021891 locus=Lus10021891.g ID=Lus10021891.BGIv1.0 annot-version=v1.0 ATGTTTGCGAAGCTCCAGTTAGATTCCAACTGCTTTCCTGGAGTTACTTCTCTGTCCAACTCTTCCTCACCAACTCAAGGAGTTTCTATCCCCACCAAGT CTGGAGCTAAGGCCGTTGTAGTGAAGCTCCGAGAACAGAGTATTCTCGAAAATTTTCAAGGAGTTGCAGAAGAGCACAATGGGGATAGGAGAACCAAAGG GAATCAGAGACCAGGTATTGTATTCGGTCCTGAATTGGAATTCCCAGATAGGAGGAGAACTACGCCGAACCGTTCTGGAACTCGTATGGGGAAGAATCTG GGAGAAGAATTGAGTGAAGTGCACACCAAGTGTTCGACGAAATGGGCCTTTTACGGAGGTTCTATTCCGGCCATTTTACAAGCGTTGGACACGGTGAAGG ACTTGGACGAGGCGTTGCATCCATGGGAGCATACTCTCAATAACAAAGTGAGGAGCATAATCTTGAAGGAGCAGTTGTGCTGGGAAAGGGCTCTTGAGAT CTTTGAGTGGTTTAAGAACAAGAGATGTTATGAGTTGAATGTTATCCACTACAACATTATGCTAAAGATTATGGGGAAAGCGAAAAATTGGAGCCTTGTT GAATATCTTTGTCAGGAAATGGCGGCCAAACGAATTTCTTTCATCAATTCAACTTACGGCACTCTTATTGATGTATGTAGTAAAGGTGGCCTTAAAGAGA AGGCACTTTGGTGGCTGGAGAAGATGAACCAGCAAGGGATCCAACCCGATGAGGTGACGGCAGGGATCGTTATGCAAATGTACAAGAAAGCTGGCGAGTT TCGGAAAGTTGAAGACTTTTTCAAGCAATGGACGTCAATGGATGATGGGTTGCGAGAGGATTATTCGTTAAGTTCGTACACGTACAATACTTTGATAGAC ACATATGGAAAATCAGGGATTGTGCCAACAACTGTGACCATGAAAAGACACTGTAAATTATCATCTTCCATGAAACCCTTATGTGTTAATTAA
AA sequence Show only first row Show all	>Lus10021891 pacid=23158072 polypeptide=Lus10021891 locus=Lus10021891.g ID=Lus10021891.BGIv1.0 annot-version=v1.0 MFAKLQLDSNCFPGVTSLSNSSSPTQGVSIPTKSGAKAVVVKLREQSILENFQGVAEEHNGDRRTKGNQRPGIVFGPELEFPDRRRTTPNRSGTRMGKNL GEELSEVHTKCSTKWAFYGGSIPAILQALDTVKDLDEALHPWEHTLNNKVRSIILKEQLCWERALEIFEWFKNKRCYELNVIHYNIMLKIMGKAKNWSLV EYLCQEMAAKRISFINSTYGTLIDVCSKGGLKEKALWWLEKMNQQGIQPDEVTAGIVMQMYKKAGEFRKVEDFFKQWTSMDDGLREDYSLSSYTYNTLID TYGKSGIVPTTVTMKRHCKLSSSMKPLCVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	0	1
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	3.3	0.8133
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	7.5	0.7890
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	8.1	0.7390
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	8.1	0.7246
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	8.5	0.7613
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	10.9	0.7920
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	14.0	0.7725
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10012098 [exp]	14.4	0.7624
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Lus10009860 [exp]	15.5	0.7493
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	16.6	0.7727

Compare expression of checked genes

Lus10021891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.