Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23000 419 / 3e-144 PKS7, ATSRPK1, ATSR2, CIPK7, SnRK3.10 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) AT4G14580 404 / 3e-138 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT5G01810 320 / 2e-105 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G45820 313 / 2e-102 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G25110 313 / 6e-102 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G10930 311 / 8e-102 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT1G01140 303 / 1e-98 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G21326 302 / 2e-98 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G30960 298 / 2e-96 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 297 / 1e-95 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039404 [exp] 475 / 1e-167 AT3G23000 356 / 2e-121 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10006640 [exp] 392 / 6e-134 AT3G23000 283 / 8e-92 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10041173 [exp] 369 / 6e-128 AT4G14580 137 / 1e-38 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) Lus10022749 [exp] 328 / 3e-108 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 324 / 1e-106 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10014163 [exp] 315 / 7e-103 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 310 / 5e-101 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 308 / 2e-100 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 306 / 1e-99 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160200 [exp] 502 / 1e-176 AT3G23000 399 / 7e-137 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.010G079000 [exp] 500 / 6e-176 AT3G23000 402 / 6e-138 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.006G263500 [exp] 325 / 6e-107 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.013G156000 [exp] 317 / 6e-104 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 315 / 4e-103 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G019900 [exp] 315 / 5e-103 AT5G10930 576 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Potri.006G186200 [exp] 311 / 6e-102 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G127500 [exp] 310 / 3e-101 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 310 / 5e-101 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G119200 [exp] 308 / 5e-100 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021892 pacid=23157964 polypeptide=Lus10021892 locus=Lus10021892.g ID=Lus10021892.BGIv1.0 annot-version=v1.0 ATGGAGCAACCACCACCGCCATCACCGTCACCACAGCAGCAGGAGGCTGCTGTTCCGCCTCCTCCTCCTCCTCCTCCTCCATTGCAACAACAACAACAAC AAATTCAGAAACCACTTCAGAGATCCACGTCAATTCCTGAGACTCTGTTGAACAGGTACAGAATGGGGAGGCTGCTCGGCCGGGGAAGCTTCGCCAAGGT ATTCGCCGCCCATTCGATCGCCGACAAGAAGGAGGTGGCAATCAAGATCATCGACAAGACGAAGATGGAATCCGTCATGGAGCCGAAAGTAATCGGGGAG ATCAAGGCGATGCGGCGCCTCCAGCAGCACCCTCACATCCTCCGCATCCAGGAGGTCCTCGCCACCAAGACTCGGATATGCCTCGTCATGGATCTCGCAA TCGGCGGCGACCTCTTCTCCAAGGTGATCAAGCGCGGCCGGATGAAGGAATCGGGCGCCCGTCGCTACTTCCAGCAGCTCGCATCCGCTCTCCGATTCTG CCACCAGAACGGCGTCGCTCGCCGTGACCTAAAGCCGCACAACCTCCTCCTCGATCAGGACGGCAATCTGAAGATCTCCGACTTCGGATTGTCGGCCCTG GCCGAGGCCGAGGCCAAGAACGGCGGGAACGGAAATCTCCAGACGGTTTGCGGAACTCCGGCGTTTACAGCTCCCGAGGTCATGTACAGGCGTGGCTACG ACGGCGCGATCACCGACGCCTGGTCCTGTGGAGTGATTCTGTTCTTCCTTTTGACCGCTACGCTTCCCTTCGACGACAGGAATTTCTCCCTGATGTTCAA GAAAATGCACAGGAGGCAGTACGAAATCCCTAATTGGATTTCCAAGCCGGCGAAATCGGTTATCTACCAGCTGCTCGATCCGGATCCGAAGACGAGAATG AGCATCGAGACTGTAATGAACCACTCGTGGTTTCTGAACAAGTACCAAACGCCTTCTCACACGAGCATTTTGGAGTCAGAGTATTATTCGAAATTCAACA ACATGGCGTCGACCTTCAATGCGTTCGATATAATCTCCATGTCATCCGGGTTGGATTTGTCAGGTTTATTCGAGACTGGTCTGAAGAAGGAGAAGAGGTT CACTTCGGCTGAGAGATTAGGGAGAGTTATGGAGAGGGTGAAGGAAGTTGGGAAAAAGCTTGATTACAGAGTTGAAGAAGGGAAAGGAGGTGGAGCTATT GGGTTGGAGAAAGGTAGGGTGGTTTTGCTCTTTGAGGCCATGGAAATTGCAGAGAAGATGGTTGTTGCTGAAGTTAGAGTTGCTAAAGGCTGTGGGTTGG AGTTTGAGGATGTTCATTGGGCAGAATTCAGGAATGGGCTTGGAGATGTGGTGCTCCATTGCCATGGCGGTGATCTCGCTTCTGCTCAGTGA
AA sequence Show only first row Show all	>Lus10021892 pacid=23157964 polypeptide=Lus10021892 locus=Lus10021892.g ID=Lus10021892.BGIv1.0 annot-version=v1.0 MEQPPPPSPSPQQQEAAVPPPPPPPPPLQQQQQQIQKPLQRSTSIPETLLNRYRMGRLLGRGSFAKVFAAHSIADKKEVAIKIIDKTKMESVMEPKVIGE IKAMRRLQQHPHILRIQEVLATKTRICLVMDLAIGGDLFSKVIKRGRMKESGARRYFQQLASALRFCHQNGVARRDLKPHNLLLDQDGNLKISDFGLSAL AEAEAKNGGNGNLQTVCGTPAFTAPEVMYRRGYDGAITDAWSCGVILFFLLTATLPFDDRNFSLMFKKMHRRQYEIPNWISKPAKSVIYQLLDPDPKTRM SIETVMNHSWFLNKYQTPSHTSILESEYYSKFNNMASTFNAFDIISMSSGLDLSGLFETGLKKEKRFTSAERLGRVMERVKEVGKKLDYRVEEGKGGGAI GLEKGRVVLLFEAMEIAEKMVVAEVRVAKGCGLEFEDVHWAEFRNGLGDVVLHCHGGDLASAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	0	1
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	3.2	0.7383
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	4.8	0.7414
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	9.5	0.6869
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	9.8	0.6759
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	10.0	0.7017
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	10.0	0.6937
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	11.5	0.7044
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	12.0	0.6734
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	14.5	0.6483
AT3G54880			unknown protein		Lus10013824 [exp]	18.2	0.6596

Compare expression of checked genes

Lus10021892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.