Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04220 694 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT2G26640 677 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT5G43760 655 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G19440 576 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 556 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G01120 554 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 532 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 520 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G25450 513 / 3e-180 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT4G34250 474 / 7e-165 KCS16 3-ketoacyl-CoA synthase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041177 [exp] 898 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10006637 [exp] 715 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10019446 [exp] 664 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 660 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10039399 [exp] 593 / 0 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039401 [exp] 582 / 0 AT1G04220 644 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10002691 [exp] 577 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10026345 [exp] 575 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10030209 [exp] 575 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G160000 [exp] 743 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 708 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 707 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 689 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 688 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 645 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 645 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 645 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 644 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.009G116700 [exp] 575 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10021895 pacid=23158014 polypeptide=Lus10021895 locus=Lus10021895.g ID=Lus10021895.BGIv1.0 annot-version=v1.0 ATGGCACCGCAGCAACAGCACCAGAGTTCATCCACCGTCACGGTCGAACCACAACGTATGGAACCGGAACCCTTCCTCAACTCGGTCCGGCTCAAGTACG TCAAATTATGCTACCATCACTTGGTCTCCAACGCCGTCTACTTTCTCGTCATCCCACTCGTCATCGCCGTTTCCTCCGTCCAACGTCAAGACATCCTCCG GTTGTGGGACCATGTCCAACGATACGACACCTTCTCCGTGTCCTTCTGCTCCGGCATCCTCGTCATCCTCGCCACGCTCTACTTCATGAGTCGGCCCAAA AAAGTCTACCTAGTTGACTTCTCATGCTACAAGCCGAACCCGGAGCGTATGTGCACGCGCGAGATCTTCGTGGAGAGGTCCGGGTTGGCCGGCACGTTCA CTGAGGAGAATTTAACGTTCCAGAAGAAGATTCTGGAGCGGTCAGGGCTCGGGCAGAACACGTATCTGCCCGAGGCCGTGATGAGGGTCCCGCCGAATCC GAACATGGCGGAGGCGAGGAAAGAGGCCGAGACGGTGATGTTCAGTGCCATCGACGAGCTGTTGGAGAAGACTGGGGTTAAGGCCAAAGACATAGGGATA TTGATCGTCAACTGTAGCTTGTTCAATCCGACGCCGTCTTTGTCTGCTATGGTTGTTAACCGTTACAAGCTTAGGGGGAATATCTCGAGCTATAATCTTG GCGGGATGGGTTGTAGCGCTGGGCTCATCTCCATCGACCTCGCCAAGCAGTTGTTACAGGTACATCCAAACTCGTACGCATTGGTAGTAAGCATGGAGAA CATAACCCTAAACTGGTACTTCGGCAACGACCGCTCCATGCTAGTCTCCAATTGCCTATTCCGCATGGGTGGCGCCGCCATCCTCCTCTCCAACCGCTCC TCCGACCGCTGCCGATCCAAATACAAGCTCATCCACACCGTCCGTACCCACAAGGGCGCTGACGACAGATCCTACGGCTGCGTCTTCCAGAAGGAAGACA ACAACTCCTCCACCTCGGCAGGACCGCGCATGAAGAACATCAAGCCGTACATACCGGACTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACGCCGGCGG GAGGGCGGTGCTTGACGAGCTGGAGAAGAATCTAGAACTTTCCGACTGGCACATGGAACCTTCTAGAATGACGCTGTACAGGTTCGGGAACACGTCCAGC AGCTCGCTGTGGTATGAGCTGGCGTACAGCGAGGCAAAAGGGAGGATCCGGAGAGGCGACCGCACGTGGCAGATTGCGTTCGGGTCGGGTTTCAAGTGTA ACAGTGCGGTTTGGCAGGCGCTCCGGACGGTTGACCCGAAAAAGGAGAAGAACCCGTGGGTTGACGAGATTGATTCGTTCCCTGTCCATGTTCCTAAGGT GGCTTACCTTAATGGCAAGCAATAG
AA sequence Show only first row Show all	>Lus10021895 pacid=23158014 polypeptide=Lus10021895 locus=Lus10021895.g ID=Lus10021895.BGIv1.0 annot-version=v1.0 MAPQQQHQSSSTVTVEPQRMEPEPFLNSVRLKYVKLCYHHLVSNAVYFLVIPLVIAVSSVQRQDILRLWDHVQRYDTFSVSFCSGILVILATLYFMSRPK KVYLVDFSCYKPNPERMCTREIFVERSGLAGTFTEENLTFQKKILERSGLGQNTYLPEAVMRVPPNPNMAEARKEAETVMFSAIDELLEKTGVKAKDIGI LIVNCSLFNPTPSLSAMVVNRYKLRGNISSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNRS SDRCRSKYKLIHTVRTHKGADDRSYGCVFQKEDNNSSTSAGPRMKNIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLELSDWHMEPSRMTLYRFGNTSS SSLWYELAYSEAKGRIRRGDRTWQIAFGSGFKCNSAVWQALRTVDPKKEKNPWVDEIDSFPVHVPKVAYLNGKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	1.4	0.9424
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	2.8	0.8851
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	3.5	0.9066
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023317 [exp]	5.2	0.8494
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	6.0	0.8941
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	8.8	0.8734
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	8.9	0.8752
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	11.2	0.8677
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	11.4	0.8120
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027725 [exp]	14.5	0.8164

Compare expression of checked genes

Lus10021895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.