Plant FIBer expression Database

Lus10021897 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55760 497 / 3e-169 unknown protein
AT1G42430 196 / 1e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034575
[exp]
192 / 2e-54 AT1G42430 598 / 0.0 unknown protein
Lus10021819
[exp]
189 / 2e-53 AT1G42430 597 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G159500
[exp]
534 / 0 AT3G55760 561 / 0.0 unknown protein
Potri.005G249700
[exp]
202 / 6e-58 AT1G42430 609 / 0.0 unknown protein
Potri.002G011300
[exp]
196 / 1e-55 AT1G42430 589 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10021897 pacid=23158001 polypeptide=Lus10021897 locus=Lus10021897.g ID=Lus10021897.BGIv1.0 annot-version=v1.0
ATGGCTTCCCATCTGGTCTTTAACTCACGCGCAGCCACGCCGCGATCGCCTTTCTTCCCGACGACTGTTACCGCCGCCGGCGTTTTCTGTTATCCTTTCG
AGCATCGGCTTCTATTCCACATAGGCAGGAGGAGCGGCAGCGGCGGATTATTAACAGAACTGCGAGTTAGGGTTTCGAAGGAAGGGACCTCGTACTTGGA
CATGTGGAGGAGCGCCGTCGAACGGGAGCGCAAGGAGGCGGAATTCCATAAGATCGCAGATAGCTTGCCTGCCAGCGATGATGGTGGGATCGCGGCTGAC
GGTTCTGGAGGTGGCGAGCCGGTTGATTTGGAGAAGAAAACCGAGGACTTCAGCAAGATTCTGGAGGTGTCTAACCAGGAGAGGGACCGGATTCAGCGAA
TGCAGGTCGTTGATCGGGCAGCTGCAGCAATCGCCGCTGCAGAGTCGCTTCTCAAGGGAATGAAGGAAAAGAAACCTGCTTCTGCGTCCGACGGTGATTC
GGTAGACGAAGCAGGAAAAGGAGCAGGACAGGAGAATAGAGGAATTGTCTTCATTCCCAAGTCTAGTGACTCGAGTAATGGAGTTCCAGGTCCAGATTTT
TGGTCCTGGACACCCCCAAACAGCAGTGACTCGGATCCCGACGATACTGGTGGGTTGCAGCCAATCGCCGCTGCAGAGTCGCTTCTCAAGGGAATGAAGG
AAAAGAAACCTGCTTCTGCGTCCGACGGTGATTCGGTAGACGAAGCAGGAAAAGGAGCAGGACAGGAGAATAGAGGAATTGTCTTCATTCCCAAGTCTAG
TGACTCGAGTAATGGAGTTCCAGGTCCAGATTTTTGGTCCTGGACACCTCCAAACAGCAGTGACTCGGATACCGACGATACTGGTGGGTTGCAGCCTGTT
AGACAACCTTCAGTTTCTCCAGTTTTGTACAATCCGGTCAAAGAAAAGGAGCGAGGCATGGACTTCCTAACAATCCCTTTCGAGACTAAACTCTCGCAGA
ACATTCCACCTTTGCAGTCAGACGTGGAGGTTAAAAATGCAGAAACTTCTGAATCTGCTCTTGCGCTGCCAGCTGTTAAAGAGGAAGTTCATGAACTAGG
TGACCAGTTCTCAGCACATGCAGCAGAGGCAGCTCATGCCCTTGATGCAGATAAGCTGCAGGAGGAGTCGTTGACCTCTGGAGTGTATCCAGACGGGTCA
AGGTGGTGGAAAGAGGTAGGAATTGAACGAAGACCCGATGGAGTTATCTGCAGGTGGACTATGTCTAGGGGTATCAGTGCTGACCAAGCTACTGAGTGGC
AAGAGAAATTCTGGGAAGCTTCTGATGACTTTGGCTACAAGGAGCTTGGTTCTGAGAAATCTGGACGTAATGCCACAGGGTGTGTGTGGCGTGAGCACTG
GAGGGAATCATTGTGGCAGGATGGTGGTCTGGTCCATCTGGAGAAAACTGCAGACAAATGGGGCAAGAACGGTGAAGGCGGCGAATGGCAGGAGAAATGG
TTCGAACATTACGATGCCTCTAATAAAGCTGAGAAATGGGCGGACAAATGGTGCAGCATTGACCCAACAACACCGCTAGACGATGGCCATGCTCATGTCT
GGCATGAAAAGTGGGGTGAGAAGTACGATGGGCATGGAGGAAGCACAAAGTACACAGACAAATGGGCAGAGAGGTGGGAAGGAGATGGATGGGCCAAGTG
GGGTGACAAATGGGACGAGGATTTCAGCGCCAACGGGCATGGAGTGAAGCAAGGTGAGACGTGGTGGGGAGGGAAGTATGGTGACAGGTGGAATCGGACA
TGGGGAGAGGAGCATAACGGGTCGGGTTGGATCCACAAGTATGGGCAGAGCAGCTGCGGAGAACACTGGGACACTCACATCCCTCAGGATACATGGTACG
AGAGATTCCCTCACTTTGGTTTCTATCACTGCTTCGACCATTCCAACCACCTCCAGCAAGTGAAGAAGCCTTCTGAGATTCTTGAATCTGGTGATGATGA
TGATGATCAGTCCCAGTCGGAGGAAGCTGAGTCTGAACCCGAACTATGA
AA sequence
>Lus10021897 pacid=23158001 polypeptide=Lus10021897 locus=Lus10021897.g ID=Lus10021897.BGIv1.0 annot-version=v1.0
MASHLVFNSRAATPRSPFFPTTVTAAGVFCYPFEHRLLFHIGRRSGSGGLLTELRVRVSKEGTSYLDMWRSAVERERKEAEFHKIADSLPASDDGGIAAD
GSGGGEPVDLEKKTEDFSKILEVSNQERDRIQRMQVVDRAAAAIAAAESLLKGMKEKKPASASDGDSVDEAGKGAGQENRGIVFIPKSSDSSNGVPGPDF
WSWTPPNSSDSDPDDTGGLQPIAAAESLLKGMKEKKPASASDGDSVDEAGKGAGQENRGIVFIPKSSDSSNGVPGPDFWSWTPPNSSDSDTDDTGGLQPV
RQPSVSPVLYNPVKEKERGMDFLTIPFETKLSQNIPPLQSDVEVKNAETSESALALPAVKEEVHELGDQFSAHAAEAAHALDADKLQEESLTSGVYPDGS
RWWKEVGIERRPDGVICRWTMSRGISADQATEWQEKFWEASDDFGYKELGSEKSGRNATGCVWREHWRESLWQDGGLVHLEKTADKWGKNGEGGEWQEKW
FEHYDASNKAEKWADKWCSIDPTTPLDDGHAHVWHEKWGEKYDGHGGSTKYTDKWAERWEGDGWAKWGDKWDEDFSANGHGVKQGETWWGGKYGDRWNRT
WGEEHNGSGWIHKYGQSSCGEHWDTHIPQDTWYERFPHFGFYHCFDHSNHLQQVKKPSEILESGDDDDDQSQSEEAESEPEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G55760 unknown protein Lus10021897
[exp]
0 1
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Lus10023383
[exp]
1.4 0.9272
AT3G23110 EMB2800, AtRLP3... EMBRYO DEFECTIVE 2800, recepto... Lus10032335
[exp]
1.7 0.9102
AT1G06040 CO BBX24, STO SALT TOLERANCE, B-box domain p... Lus10025579
[exp]
2.2 0.9361
AT1G02630 Nucleoside transporter family ... Lus10030104
[exp]
4.6 0.9021
AT3G23600 alpha/beta-Hydrolases superfam... Lus10035767
[exp]
5.7 0.8815
AT5G67350 unknown protein Lus10019301
[exp]
5.7 0.8679
AT5G24930 CO COL4, ATCOL4 CONSTANS-like 4 (.1) Lus10042431
[exp]
6.3 0.9096
AT3G23110 EMB2800, AtRLP3... EMBRYO DEFECTIVE 2800, recepto... Lus10024721
[exp]
6.7 0.8920
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Lus10038424
[exp]
8.3 0.8768
AT5G16010 3-oxo-5-alpha-steroid 4-dehydr... Lus10008951
[exp]
8.4 0.9089

Lus10021897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.