Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04210 446 / 2e-147 Leucine-rich repeat protein kinase family protein (.1) AT5G66850 102 / 2e-23 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G63700 102 / 2e-23 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT4G31170 100 / 2e-23 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 99 / 1e-22 Protein kinase superfamily protein (.1) AT4G08500 96 / 2e-21 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT1G62400 91 / 5e-20 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT1G53570 92 / 7e-20 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT3G06030 91 / 1e-19 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT3G50720 89 / 2e-19 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041180 [exp] 762 / 0 AT1G04210 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027496 [exp] 109 / 1e-25 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 106 / 1e-24 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10029657 [exp] 100 / 5e-23 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10003745 [exp] 97 / 1e-22 AT4G08500 400 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Lus10032279 [exp] 100 / 2e-22 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002374 [exp] 96 / 2e-22 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10024645 [exp] 99 / 3e-22 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000237 [exp] 95 / 3e-22 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G158600 [exp] 508 / 2e-171 AT1G04210 1172 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G081400 [exp] 501 / 1e-168 AT1G04210 1212 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G146700 [exp] 111 / 3e-26 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.002G129100 [exp] 110 / 4e-26 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.012G143900 [exp] 108 / 1e-25 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.014G035500 [exp] 105 / 1e-24 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.001G102900 [exp] 103 / 1e-23 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.002G088900 [exp] 102 / 1e-23 AT4G08500 411 / 4e-137 MAPK/ERK kinase kinase 1 (.1) Potri.005G135100 [exp] 102 / 2e-23 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.018G001900 [exp] 101 / 2e-23 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021898 pacid=23157969 polypeptide=Lus10021898 locus=Lus10021898.g ID=Lus10021898.BGIv1.0 annot-version=v1.0 ATGGTTGTGGATGCATGCACCCCTTATGATATCCGAGAGGAGACAGATCCAGAATACTTCTGCAGGTACATTCCTCTTAGTCGGATCAATGTTCATCTTC CAAACGAGAAATTACCTGGTTCTGATTGTTCATTTCCTTCCCTCTCTACTTCCGATGAGTTGGAAAAAACTGCTTCGAGCTCTCTAAAGCCTTGTAAGCT AGGATCTGTTGAAGCTGTAGCCAAGGTGCGAACTTTGGAGACAGGTGGGAAATTGGCGGATGAGATCAGGAACTTTGAACAAAATTGCCTTGGGGAAGTG AGAATGTTGGGTGCTCTGCAACATCCATGCATAATTAAGACTTACGGGCATAAGATTTCGTCGCAATGGATCTTTTCAGAAGAAGGGAGACCTGAGCGTC GTGTTTTACAATCAGCAATATTTATGGAGTATGTTAAAGGTGGATCCTTGAAGAGTTATTTGGAGAAGGTATCAGAAGCAGGGGATAAGCATGTACCAGT GGACGTAGCATTATGTATCGCTCAAAATGTAGCATCTGCATTGGCAGAGCTGCACTCTAAGCATGTCATTCATCGCGACATAAAAAGTGAAAACATATTG ATGGATTTTGAGGGCAAGAGAACCGATGGTTTGCCTATGGTGAAACTTTGCGATTTTGACAGAGCAGTGCCCTTGAGGTCTTCCTTGCATACTTGCTGTA TTGCTCACAGCGGGATAGCTCCTCCTAACGTATGTGTTGGCACTCCTCGTTGGATGGCCCCCGAGGTTCTTCGTGCAATGCATGAACATATAACATATGG TCTGGAAGTAGATATTTGGTCGTATGGATGCCTGCTCTCTGAATTGTTGACCCTCCGAGTACCGTATTCTGATGTGCCTGAACAACACATTCACGAACTT CTTGAGAGTGGTAGGCGCCCTCCATTACCTGATGATCTTGAGGATCTGGTGAATGTTCCTGCACCCGAGGAGAAGTCCGAACCAGAGACCAAGTGGTCTG AAGAACATGAGACGTTGAGGTTCCTCGTTAAGTTATTCCGGCAGTGCACGGAGGGAAATCCTTTAGATCGACCTACAGCCACCGATATTTACGAGTCGCT CATTGCTCACGCGGACACGATAAATTCAAGGAAGTTGAGGAGTAATGTAGATGATGACTAA
AA sequence Show only first row Show all	>Lus10021898 pacid=23157969 polypeptide=Lus10021898 locus=Lus10021898.g ID=Lus10021898.BGIv1.0 annot-version=v1.0 MVVDACTPYDIREETDPEYFCRYIPLSRINVHLPNEKLPGSDCSFPSLSTSDELEKTASSSLKPCKLGSVEAVAKVRTLETGGKLADEIRNFEQNCLGEV RMLGALQHPCIIKTYGHKISSQWIFSEEGRPERRVLQSAIFMEYVKGGSLKSYLEKVSEAGDKHVPVDVALCIAQNVASALAELHSKHVIHRDIKSENIL MDFEGKRTDGLPMVKLCDFDRAVPLRSSLHTCCIAHSGIAPPNVCVGTPRWMAPEVLRAMHEHITYGLEVDIWSYGCLLSELLTLRVPYSDVPEQHIHEL LESGRRPPLPDDLEDLVNVPAPEEKSEPETKWSEEHETLRFLVKLFRQCTEGNPLDRPTATDIYESLIAHADTINSRKLRSNVDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	1.0	0.9237
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	3.2	0.8507
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	4.6	0.8557
AT3G57000			nucleolar essential protein-re...		Lus10035220 [exp]	4.9	0.8602
AT2G29200		APUM1	pumilio 1 (.1)		Lus10001567 [exp]	6.2	0.8346
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	6.3	0.8985
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Lus10024309 [exp]	8.1	0.8464
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	9.0	0.8664
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	9.5	0.8533
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	11.6	0.8399

Compare expression of checked genes

Lus10021898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.