Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04210 545 / 1e-176 Leucine-rich repeat protein kinase family protein (.1) AT3G22850 155 / 3e-42 Aluminium induced protein with YGL and LRDR motifs (.1) AT5G43830 139 / 7e-37 Aluminium induced protein with YGL and LRDR motifs (.1) AT4G27450 98 / 2e-22 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 91 / 6e-20 Aluminium induced protein with YGL and LRDR motifs (.1.2.3) AT5G19140 77 / 2e-15 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT2G30105 57 / 5e-08 unknown protein AT4G35470 54 / 4e-07 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 53 / 8e-07 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G11330 52 / 1e-06 PIRL9 plant intracellular ras group-related LRR 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041180 [exp] 1229 / 0 AT1G04210 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039382 [exp] 177 / 5e-50 AT5G43830 372 / 6e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10006624 [exp] 176 / 2e-49 AT5G43830 374 / 2e-132 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10041181 [exp] 166 / 5e-46 AT5G43830 369 / 1e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10034883 [exp] 94 / 7e-21 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 93 / 1e-20 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10018484 [exp] 85 / 9e-18 AT4G27450 305 / 3e-105 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10010505 [exp] 79 / 7e-16 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2) Lus10034038 [exp] 79 / 7e-16 AT5G19140 389 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081400 [exp] 698 / 0 AT1G04210 1212 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G158600 [exp] 681 / 0 AT1G04210 1172 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G158400 [exp] 155 / 2e-42 AT5G43830 388 / 3e-138 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.010G081600 [exp] 152 / 2e-41 AT5G43830 391 / 3e-139 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 94 / 8e-21 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.001G403000 [exp] 90 / 2e-19 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 88 / 5e-19 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.004G040600 [exp] 86 / 3e-18 AT4G27450 366 / 2e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.008G203400 [exp] 79 / 5e-16 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2) Potri.003G090100 [exp] 59 / 1e-08 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0052 [flax] [poplar] NTN PF12481 [flax] [poplar] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Lus10021899 pacid=23158024 polypeptide=Lus10021899 locus=Lus10021899.g ID=Lus10021899.BGIv1.0 annot-version=v1.0 ATGCTGGCCGTGTTTGACAAGAACGTCGCCAAGTGCCCGCCGGAGCTCCAAAGCCCGCCCGCCGGGAGTTCAGCCTCCGCCCTCAAAGATGGGTTCTTGG CCAAGCATTTCGAGTCCCTTCATCCTTCTCCCGTCCTCGTCAATCTCTTTGCTTTCTTGCTATATGATAGCGCTTCCAAAGTCACACTCTTTGCTTCTTC TTTGTACAGGATGCTGATGGCAGTGTTCCCTTCTTCTGGGGAACTGATTATGACGGGCAGTGTTCCCTTCTTCTGGGGAACTGATTATGACGGCCAGCTT GTTCTAGCAGATAATACTGAAGTTATTCAAAAGGGATGTGGGAAATCTTATGCGCCATTTCCCAAAGGATGCTTCTTTACAACAAGTGGAGGCTTGAGGA GCTTTGAACACCCTCTGAATGAGCTGAAGCCAATTCCAAGAGTTGACAGCTCCGGCCAAGTGTGTGCTCTTCCTTCCGATTCCTCCTTCCTTCCCTATTT TGTTCCTCTTCTTCCTCCTCCTCCTCCCAATCAGCTCTATATAGAACCAACTCTCCGTCGTCTCAGCTTCAGACCTCGTATTGCCTCACAGCTAGGTTAC GGATTTTTTCTCGTCGCTTTTGCCGAGTACTCGATGCAACGGTCCAATTCTTCCACACTGATTTCGGATTCATCGTTTGTTGAGGAAACTCCCATGTCGG AATCCTCGGAGTCAACCGCGACTGACTCTTCCTCCGCCGCTGCCACGGTCACAAGCAACGGCACTAATGTAGACGACGGCGACGACTTGGTTCTCGATGT TTCTGGGAAAAGTTTGGAGCTTGATATGATTGATCAAGCTGCCGATTACTCAATGCAGCAGCCCAATTCTTCCACACTGATTTCGGATTCATCGTTTGTT GAGGAAACCCCCATGTCGGAAGCTTCGGCGTTGACCGCGACCGACTCTTCCTCCGCCGCTACCACGACCACAAGCAACGGCACTAATGTAGACGACGACT TGGTTCTCGATGTTTCTGGGAAAAGTTTGGAGCTTGATATGTTTGATCAACCTGACGATTCATTGAACGGGTTGTATGTGTACAAGAATGTTTTTAGCTT GCTGCCGAAGTCGGTTGGAAGGCTTGACCGGTTGAGGACGTTCAAGTTTTTCGGGAACGAGGTGAATTTGTTTCCGGCGGATTTTGGGAATCTGGTGGGA TTGGAGTGCCTGCAGGTCAAAATGTCTTCCCCCGGCCTGAATGGATTGGGGTTAAATAAATTGAGGGGCTTGAAGGAGCTTGAGTTGTCCAAAGTGCCTC CAAGATCCTCTGTTCTAACCATTTTGACCGAGATATCTGGCCTTAAGAGCTTAACTAAGCTTTCTGTTTGTCACTTCTCAATAAGATATCTTCCACCAGA AATTGGGTGCTTAACAAACTTGGAGTACTTGGACCTCTCATTCAATAAGCTAAAATCTCTGCCTACCGAAATCAGTCATCTAAGCGCTTTGATATCACTC AAAGTTGCTAACAATAAACTAGTGGAACTACCCAACAGTTTGTCGTTACTACAGAAACTGGAGAGCTTGGATCTATCAAACAACAGGTTAACTTCGTTGG GCTCCCTTGAGCTTGGTTTGATGCATAATCTATTCTACTTGAATCTTCAGTGCAACAAACTCGTCTATTGTTTTCAAATACCATCATGGATATGTTGCAA CTTGGAAGGAAACGTAAAGGACATGTCCAAGGATGATTTCACAAGCTCCTCTGTTGAAATGGATGTATATGAAACTTTCATTCCCAAGGATGAGAATAAT GTCTCTGGTAGTCGTCATGCTTCATCAAGCCTATCGAATGGCCATTTGTCAAATGGAAGATGTTCTGCATCTCAGAGGTCAAGCAAGCGGTGGAAGCGGC CTCATTCTCTGCAGCAAAAAGCTCGCCAAGAACGTCTGAACAGCAGCAGGAAGTGGAAAGGTGAAGGGTGCCTTAAGTTATCGGTCCCTGGTGATGCTGA TAATTCCAGGCTGGATGGTATCGATAAAATTCATGAAGAACATTCATCAGAAATGATTGTCAATAATGAAGAAAAAGGAGATATAATAATCTCAGTTGAA GGCGAAGGTGTTGAATTGGTTCCTAGTTTTGAGGATGATAAAATCTCTTCCAAGGAAGAACTTTGCAGTGAAAATTGCGCACCAAATAGTGAATCCATCA CCAGAGATGCGGAAGAAGAAAATTGCGTTCCTGATGAATCTTTCACGTCAACAGTCACACAGGCTGGAACCGATGAACAAGTTGAAAGTTCATCTTTGGA CTCCGAAATCCCTATCAAGCCGAAAAGGCATTCTGAAGCAGATCTTAATAACCCAAAACCGTGCAAGTGTCCTAGAGCAAGAGGAGACAGCTTAACTTTG TCCCGCAAGTATAACGACCTTTCATTCTGTAGTATCGAGGACAATATGCCAGATGGATTCTATGATGCTGGACGGGACCGGCCATTCATGCCTCTGTGGA ATCATGATGAAGTTTTGCCACTCGATGCCCGTGAGGTCATTCTTTTAGACAGGAAGAGAGATGAGATTTTAGATGCTACGGTACTCTCAGCTCAAGCTTT GGTGTCTCGCACAATGTTAAATTTTTCTGCCCAGGGATGCTCCAAGGCTGCAACAGATGGCCTTAATACTGCGTTGTTGCTGGCGATTTTCGTGTCTGAT CATTTTGGCGGTAGCGATAAAGGTGCTACTTTGGAAAGAACGCGGAAGGCTGTGTCTGGTTCGAACTACACGAAACCTTTTGTTTGCACTTGTTCAACTG GAAACCGTGATTTTATCAGTAGTATCCAAACTTCCAGTCAGATTCCAGACAGTGTAGGAGAAATTAATCTTGCTGATATCTGCGATAGATCACTGTCTTC TATAAAAGCTAGGCGAAATTCTGTTGTAGTTTGCAGAATCTATGTGATCCAATGGATCCTCCAATACCTTGCGAACTTGTTAGGGGTTACCTGGACTTCA CGCCTCATGCCTGGAATATTGTCATCCTCAAAAGGGGTAGTTCCTTAG
AA sequence Show only first row Show all	>Lus10021899 pacid=23158024 polypeptide=Lus10021899 locus=Lus10021899.g ID=Lus10021899.BGIv1.0 annot-version=v1.0 MLAVFDKNVAKCPPELQSPPAGSSASALKDGFLAKHFESLHPSPVLVNLFAFLLYDSASKVTLFASSLYRMLMAVFPSSGELIMTGSVPFFWGTDYDGQL VLADNTEVIQKGCGKSYAPFPKGCFFTTSGGLRSFEHPLNELKPIPRVDSSGQVCALPSDSSFLPYFVPLLPPPPPNQLYIEPTLRRLSFRPRIASQLGY GFFLVAFAEYSMQRSNSSTLISDSSFVEETPMSESSESTATDSSSAAATVTSNGTNVDDGDDLVLDVSGKSLELDMIDQAADYSMQQPNSSTLISDSSFV EETPMSEASALTATDSSSAATTTTSNGTNVDDDLVLDVSGKSLELDMFDQPDDSLNGLYVYKNVFSLLPKSVGRLDRLRTFKFFGNEVNLFPADFGNLVG LECLQVKMSSPGLNGLGLNKLRGLKELELSKVPPRSSVLTILTEISGLKSLTKLSVCHFSIRYLPPEIGCLTNLEYLDLSFNKLKSLPTEISHLSALISL KVANNKLVELPNSLSLLQKLESLDLSNNRLTSLGSLELGLMHNLFYLNLQCNKLVYCFQIPSWICCNLEGNVKDMSKDDFTSSSVEMDVYETFIPKDENN VSGSRHASSSLSNGHLSNGRCSASQRSSKRWKRPHSLQQKARQERLNSSRKWKGEGCLKLSVPGDADNSRLDGIDKIHEEHSSEMIVNNEEKGDIIISVE GEGVELVPSFEDDKISSKEELCSENCAPNSESITRDAEEENCVPDESFTSTVTQAGTDEQVESSSLDSEIPIKPKRHSEADLNNPKPCKCPRARGDSLTL SRKYNDLSFCSIEDNMPDGFYDAGRDRPFMPLWNHDEVLPLDAREVILLDRKRDEILDATVLSAQALVSRTMLNFSAQGCSKAATDGLNTALLLAIFVSD HFGGSDKGATLERTRKAVSGSNYTKPFVCTCSTGNRDFISSIQTSSQIPDSVGEINLADICDRSLSSIKARRNSVVVCRIYVIQWILQYLANLLGVTWTS RLMPGILSSSKGVVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04210			Leucine-rich repeat protein ki...		Lus10021899 [exp]	0	1
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	1.0	0.9605
AT1G48950			C3HC zinc finger-like (.1)		Lus10038947 [exp]	1.4	0.9557
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10005699 [exp]	5.2	0.9452
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	8.4	0.9318
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	8.7	0.9172
AT1G76740			unknown protein		Lus10028114 [exp]	9.2	0.9333
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10008047 [exp]	9.2	0.9418
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	12.0	0.9262
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	14.3	0.9380
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	14.5	0.8968

Compare expression of checked genes

Lus10021899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.