Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22845 349 / 7e-124 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G07680 120 / 7e-34 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 68 / 8e-14 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 67 / 9e-14 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 60 / 8e-11 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 56 / 1e-09 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 55 / 3e-09 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 51 / 1e-07 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 49 / 3e-07 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 45 / 6e-06 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041182 [exp] 429 / 1e-155 AT3G22845 350 / 2e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10006623 [exp] 400 / 3e-144 AT3G22845 349 / 5e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 395 / 3e-142 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10032588 [exp] 120 / 2e-33 AT3G07680 305 / 3e-106 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022525 [exp] 117 / 8e-33 AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10016624 [exp] 114 / 1e-31 AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10035821 [exp] 112 / 5e-31 AT3G07680 254 / 1e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036603 [exp] 111 / 2e-30 AT3G07680 259 / 9e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10043160 [exp] 116 / 3e-30 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081700 [exp] 364 / 8e-130 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G369000 [exp] 116 / 3e-32 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 62 / 1e-11 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 61 / 3e-11 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 60 / 6e-11 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 59 / 1e-10 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 59 / 2e-10 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 50 / 3e-07 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 49 / 7e-07 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10021900 pacid=23158031 polypeptide=Lus10021900 locus=Lus10021900.g ID=Lus10021900.BGIv1.0 annot-version=v1.0 ATGGAGATGAAGCAGATCTACGTCGCGACGGCTCTTTTCCTGAGCTTCGTCGGCCGAATCTCTGCCCTCTCTATCACCGTCAACGACATAGAGTGCGTGT ATGAGTATGTATTCTACGAGGGGGACTCCGTCTCCGGTAACTTCGTCGCCGTCGATCATGATATCTTTTGGAGCACTGATCATCCTGGCATTGATTTCAC TGCCACCTCTCCTGGAGGTAATGTTGTGAAGGAGATAAAGGGTACATCTGGAGATAAGTTCGAGTTCAAGGCTCCGAGGAGTGGAATGTACAAATTCTGT TTTCACAACCCGTTTAGCACCCCAGAGACAGTAGCTTTCTATATTCACGTGGGCCACATTCCAAATGAGAATGATGTTGCAAAAGATGAGCATCTGGACC CCGTCAATGTGAAAATTGCTGAGCTGAGAGAGGCATTAGAATCGGTTACAGCAGAACAGAAGTACCTGAGAGTACGTGACAATAGACATCGACACACAAA TGAGAGCACAAGAAAGCGTGTGATAGGCTACACGGTTGCAGAATACATAGCGCTGGCTGCCGTGAGCTCACTTCAAGTGTTGTATATCAGGCGCCTCTTC AGCAAGTCGGTGGCATACAATCGTGTTTGA
AA sequence Show only first row Show all	>Lus10021900 pacid=23158031 polypeptide=Lus10021900 locus=Lus10021900.g ID=Lus10021900.BGIv1.0 annot-version=v1.0 MEMKQIYVATALFLSFVGRISALSITVNDIECVYEYVFYEGDSVSGNFVAVDHDIFWSTDHPGIDFTATSPGGNVVKEIKGTSGDKFEFKAPRSGMYKFC FHNPFSTPETVAFYIHVGHIPNENDVAKDEHLDPVNVKIAELREALESVTAEQKYLRVRDNRHRHTNESTRKRVIGYTVAEYIALAAVSSLQVLYIRRLF SKSVAYNRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10021900 [exp]	0	1
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	8.7	0.7947
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10009360 [exp]	10.2	0.7706
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	10.4	0.7849
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10041182 [exp]	11.3	0.7683
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	19.5	0.7809
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10011373 [exp]	21.7	0.7799
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	22.4	0.7789
AT3G10330			Cyclin-like family protein (.1...		Lus10035440 [exp]	24.4	0.7505
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	27.3	0.7644
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	28.2	0.7783

Compare expression of checked genes

Lus10021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.