Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14723 102 / 2e-29 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT3G22820 100 / 6e-29 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT2G30370 90 / 4e-24 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT3G13898 45 / 6e-07 unknown protein AT1G80133 44 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041186 [exp] 134 / 3e-42 AT4G14723 106 / 5e-31 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10006616 [exp] 100 / 5e-29 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10024189 [exp] 82 / 3e-21 ND 107 / 4e-31 Lus10008387 [exp] 54 / 2e-10 AT3G13898 76 / 9e-19 unknown protein Lus10006016 [exp] 53 / 3e-09 AT3G13898 76 / 4e-17 unknown protein Lus10011591 [exp] 47 / 2e-07 AT4G37810 102 / 6e-29 unknown protein Lus10035922 [exp] 41 / 1e-05 AT5G10310 100 / 2e-28 unknown protein Lus10019254 [exp] 39 / 0.0001 AT4G37810 74 / 5e-18 unknown protein Lus10025740 [exp] 38 / 0.0002 AT5G10310 100 / 2e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157300 [exp] 100 / 6e-29 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.013G155500 [exp] 92 / 5e-25 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 89 / 1e-23 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.010G082200 [exp] 78 / 1e-19 AT4G14723 71 / 1e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.003G042300 [exp] 52 / 1e-09 AT3G13898 80 / 4e-20 unknown protein Potri.018G130700 [exp] 44 / 2e-06 AT1G80133 62 / 1e-13 unknown protein Potri.007G095400 [exp] 42 / 5e-06 AT5G10310 105 / 2e-30 unknown protein Potri.005G073700 [exp] 41 / 2e-05 AT5G10310 102 / 7e-29 unknown protein Potri.002G112900 [exp] 41 / 3e-05 AT4G37810 90 / 9e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021901 pacid=23158016 polypeptide=Lus10021901 locus=Lus10021901.g ID=Lus10021901.BGIv1.0 annot-version=v1.0 ATGGCCGTGCCCCGCCGCCAAAACAGTCACTCACCCTCCGCCATTGCCGCCGCCGCCTTCTTCACCTTCCTCTTCTTCTCTTTCTTCACCACCACTCTTG CCAATCTCGGTAGCAGTCAGGGGAACGGCAGGTTGGAAGAGTTGACGAACCAGAAGCGGTTGGCTGGACCGGGTTCGTTGCCCCCGACTTGCAGATCAAA ATGCGGAGGTTGCAGTCCTTGCAAACCGGTCCACGTCCCGGTTCATCCAGGGGTTAGCTTCACATTGGAGTACTACCCGGAAGCTTGGCGATGCAAGTGT GGAGACAAGCTCTTCATGCCCTAA
AA sequence Show only first row Show all	>Lus10021901 pacid=23158016 polypeptide=Lus10021901 locus=Lus10021901.g ID=Lus10021901.BGIv1.0 annot-version=v1.0 MAVPRRQNSHSPSAIAAAAFFTFLFFSFFTTTLANLGSSQGNGRLEELTNQKRLAGPGSLPPTCRSKCGGCSPCKPVHVPVHPGVSFTLEYYPEAWRCKC GDKLFMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10021901 [exp]	0	1
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	1.7	0.9043
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10041186 [exp]	1.7	0.8944
AT5G20950			Glycosyl hydrolase family prot...		Lus10010657 [exp]	2.8	0.8806
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	6.7	0.8741
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	9.1	0.8987
AT2G11890			adenylate cyclases (.1.2)		Lus10002992 [exp]	12.4	0.8643
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	12.8	0.8561
AT5G41270			unknown protein		Lus10035306 [exp]	13.0	0.8422
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	13.2	0.8727
AT4G21620			glycine-rich protein (.1.2)		Lus10006730 [exp]	14.5	0.8320

Compare expression of checked genes

Lus10021901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.