Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43850 303 / 1e-106 ATARD4 RmlC-like cupins superfamily protein (.1) AT4G14710 255 / 3e-87 ATARD2 RmlC-like cupins superfamily protein (.1.2.3.4.5) AT4G14716 252 / 3e-86 SGB3, ATARD1 suppressor of G Beta 3, acireductone dioxygenase 1 (.1) AT2G26400 243 / 1e-82 ARD, ATARD3 acireductone dioxygenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039375 [exp] 258 / 2e-88 AT4G14710 341 / 7e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5) Lus10006617 [exp] 257 / 1e-87 AT4G14710 342 / 2e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157400 [exp] 296 / 1e-103 AT5G43850 308 / 2e-108 RmlC-like cupins superfamily protein (.1) Potri.008G157500 [exp] 260 / 3e-89 AT4G14710 333 / 5e-118 RmlC-like cupins superfamily protein (.1.2.3.4.5) Potri.010G082101 [exp] 86 / 2e-22 AT2G26400 97 / 8e-27 acireductone dioxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03079 [flax] [poplar] ARD ARD/ARD' family
Representative CDS sequence Show only first row Show all	>Lus10021902 pacid=23158057 polypeptide=Lus10021902 locus=Lus10021902.g ID=Lus10021902.BGIv1.0 annot-version=v1.0 ATGGCTATTGAGATCGAGGCGTGGTTCATGGACGACGGCAGCGAAGACCAACGCCTCCCGCACCGCCGCATCCCGAACGAGCCCGTCTCAATGGACTACT TAGCTGAATTAGGAGTATTGTACTGGAAACTGAACCCTAAGAAGTACGAAGACGACGAGGAATTGAACGAAATTAGGCAATCCAGGGGATACAATTACAT GGATTTGCTTGACCTGTGCCCGGAGAAAGTTGCAAACTACGAGCAGAAGCTCAAGAACTTCTACACGGAGCACATTCACGGCGATGAGGAGATACGTTAC TGCTTAGAAGGAAGTGGCTACTTTGATGTCCGCGACAAAAACGATCGTTGGATAAGAATCTGGATCAAGCCTGGGGATCTCATCATATTGCCTGCTGGGA TTTACCACAGATTCACACTTGACACCACCAACTACATCAAGTTGATGAGATTGTTCATTGGAGAGCCAGTTTGGACGCCGTTTAATCGTCCCCAGGAAGA CCATCCAGCCAGGATGGAGTATGTCAACAGCATCGGTGCATATCGAGTGGCGCAATCTGCTCATTGA
AA sequence Show only first row Show all	>Lus10021902 pacid=23158057 polypeptide=Lus10021902 locus=Lus10021902.g ID=Lus10021902.BGIv1.0 annot-version=v1.0 MAIEIEAWFMDDGSEDQRLPHRRIPNEPVSMDYLAELGVLYWKLNPKKYEDDEELNEIRQSRGYNYMDLLDLCPEKVANYEQKLKNFYTEHIHGDEEIRY CLEGSGYFDVRDKNDRWIRIWIKPGDLIILPAGIYHRFTLDTTNYIKLMRLFIGEPVWTPFNRPQEDHPARMEYVNSIGAYRVAQSAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	0	1
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	1.0	0.9506
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	2.4	0.9184
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	3.0	0.9154
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	3.9	0.8954
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	5.3	0.8964
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	5.9	0.8830
AT5G55980			serine-rich protein-related (....		Lus10043215 [exp]	6.5	0.8183
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	8.0	0.8472
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10039005 [exp]	8.8	0.8197
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	11.0	0.8595

Compare expression of checked genes

Lus10021902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.