Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14740 153 / 1e-44 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT3G22810 141 / 9e-39 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G43870 137 / 3e-37 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 120 / 2e-31 FKD1 FORKED 1 (.1.2) AT4G32785 75 / 7e-17 unknown protein AT5G47440 57 / 3e-09 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 57 / 4e-09 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G17350 56 / 7e-09 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039370 [exp] 260 / 2e-86 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 218 / 7e-69 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 159 / 1e-45 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10014703 [exp] 107 / 9e-28 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10004079 [exp] 92 / 2e-21 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10009509 [exp] 76 / 4e-16 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014704 [exp] 64 / 3e-12 AT3G63300 143 / 9e-41 FORKED 1 (.1.2) Lus10004734 [exp] 64 / 2e-11 AT4G17350 389 / 2e-133 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082400 [exp] 160 / 6e-46 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 155 / 3e-44 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.005G213800 [exp] 133 / 1e-35 AT3G63300 388 / 7e-131 FORKED 1 (.1.2) Potri.002G049200 [exp] 127 / 1e-33 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.018G042000 [exp] 74 / 5e-15 AT4G32785 159 / 1e-47 unknown protein Potri.003G077900 [exp] 67 / 1e-12 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 65 / 7e-12 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10021903 pacid=23157998 polypeptide=Lus10021903 locus=Lus10021903.g ID=Lus10021903.BGIv1.0 annot-version=v1.0 ATGGAGTTCCTCTCCCGATCATGGAGCCTCTCTGCTTTTGAAGTCTCCAAGGCACTGGGTCCACCACCACCACCACCACCTCCTCCTCAAATGATCCTCT CTTCTGGCGCCATTCAAGAAGACATCATCGCTGAGCTGGATGACGGCGGCACCGCCACTTTCACCCGCAACCCTACTTTCTCCTTCGCCTCCTCCGAGAC TTCCCAGATGGTCATGGACCGTATTTTGTCTCACTCACAAGATGTGTCGCCAAGAACTTCAGGCAGACTCTCCCATAGCAGCGGTCCTCTCAATGGTTCC TTAACCGACAGCCCTCCCGTTTCTCCATCTGATCTCGAGGATCTCAAGGGCTACCGCGCCAGCAACAACAACAACAACTTCCATTACAACCTCCAGACCG CCCATCCGGTGGAGAGAGGGATTACCGTTAGTGGTGGTAACGGTAACGGTAGTAATGGCAGTTCTAGTGGGGAGCTTGTTCCTGAAGAGAATTTTCTAGG GATTTGCAGCAGAGAATTGCTAGCCAGAGGTTGTGAGCTTCTCAAGCGTACACGGACAGGGGAGCTGCACTGGAAGATTGTGTCTGTTTACATCAACAGG ATGAATCAGGTTATGTTGAAGATGAAGAGCAGACATGTTGCTGGGACCATAACCAAAAAGAAAAAGAATCTGGTGCTGGATGTGATCAAGAATGTTCCAG CATGGCCGGGGCGTCCGGGCGGGGGCGGGCGTTCGTTGGGGGGAAGGCGGAGAGAATCGGAGGTATTTCGGGTTGAAGACTGTGTTAAGAGGGGAGGTTG A
AA sequence Show only first row Show all	>Lus10021903 pacid=23157998 polypeptide=Lus10021903 locus=Lus10021903.g ID=Lus10021903.BGIv1.0 annot-version=v1.0 MEFLSRSWSLSAFEVSKALGPPPPPPPPPQMILSSGAIQEDIIAELDDGGTATFTRNPTFSFASSETSQMVMDRILSHSQDVSPRTSGRLSHSSGPLNGS LTDSPPVSPSDLEDLKGYRASNNNNNFHYNLQTAHPVERGITVSGGNGNGSNGSSSGELVPEENFLGICSRELLARGCELLKRTRTGELHWKIVSVYINR MNQVMLKMKSRHVAGTITKKKKNLVLDVIKNVPAWPGRPGGGGRSLGGRRRESEVFRVEDCVKRGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43870			Plant protein of unknown funct...		Lus10021903 [exp]	0	1
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	3.9	0.8480
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	7.4	0.8633
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10036941 [exp]	8.5	0.8457
AT1G15260			unknown protein		Lus10025783 [exp]	10.4	0.8287
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	12.1	0.8544
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	13.7	0.8562
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002907 [exp]	16.9	0.8515
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10014177 [exp]	18.9	0.8238
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	23.5	0.8269
AT1G75860			unknown protein		Lus10033130 [exp]	26.2	0.8258

Compare expression of checked genes

Lus10021903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.