Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 215 / 3e-65 IQD19 IQ-domain 19 (.1) AT4G00820 70 / 2e-12 IQD17 IQ-domain 17 (.1) AT1G01110 67 / 9e-12 IQD18 IQ-domain 18 (.1.2) AT3G49260 65 / 5e-11 IQD21 IQ-domain 21 (.1.2.3) AT4G29150 62 / 3e-10 IQD25 IQ-domain 25 (.1) AT3G16490 57 / 9e-09 IQD26 IQ-domain 26 (.1) AT5G03040 57 / 2e-08 IQD2 IQ-domain 2 (.1.2.3) AT4G10640 57 / 2e-08 IQD16 IQ-domain 16 (.1) AT1G72670 57 / 2e-08 IQD8 IQ-domain 8 (.1) AT5G07240 56 / 2e-08 IQD24 IQ-domain 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041188 [exp] 555 / 0 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10006613 [exp] 350 / 4e-116 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10039366 [exp] 155 / 4e-44 AT4G14750 71 / 2e-14 IQ-domain 19 (.1) Lus10010104 [exp] 69 / 5e-12 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 68 / 5e-12 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10005760 [exp] 63 / 2e-10 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10014870 [exp] 62 / 5e-10 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10018115 [exp] 61 / 8e-10 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3) Lus10039367 [exp] 57 / 9e-10 AT4G14750 59 / 2e-11 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156700 [exp] 325 / 7e-107 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 298 / 1e-96 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.014G104600 [exp] 71 / 8e-13 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.013G038901 [exp] 70 / 8e-13 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.002G178500 [exp] 69 / 3e-12 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.005G051500 [exp] 66 / 2e-11 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.012G139800 [exp] 65 / 5e-11 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.001G190500 [exp] 62 / 3e-10 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.015G142200 [exp] 62 / 4e-10 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.006G226600 [exp] 62 / 5e-10 AT2G26180 386 / 1e-131 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10021904 pacid=23158062 polypeptide=Lus10021904 locus=Lus10021904.g ID=Lus10021904.BGIv1.0 annot-version=v1.0 ATGGGGAAGACTGGAAAATGGCTCAAGAGTTTCTTGACTGGGAAGAAACAAAACGATAAGCTAAGAGAATCGAAGGAAACTTGTATCATCAGTGCGAAGG GCGCATGCATCATCAGTTATCAGGATTCAAATCCTAACCTTGAAAGTCCAGCAGCCACTCCAATTTCCCACCCGCCGACCACTCCTAAAGAGAAGCGGAG ATGGAGCTTTAGAAGGTCATCCGCCGCCGCCGCCACCGGATCAATGGCCAATTCTGCAGAACCACCTTCTCCCTTGGCCCTCACTGTTGTTGTCCCTACT ACGCCTCCTCCAGCCGTGCAGGCTCAGTTGGGCTCCGAAGATGAGCATAAGAAGCACGCAATGGCAATGGCCGCTGCTACGGCTGCCGCCGCCGATGCTG CGGTGGCTGCTGCCCAGGCTGCCGCTGCTGTAATCCGCCTCACCGCAGAAAGGAACGCCGTAATTGAAGATGCTGCGGCTCTTTTGATCCAGTCTGTGTT CCGATCTTACTTGGCGAGGAAGGCATTGAGAGCGCTGAAAGGATTGGTGAAGCTACAAGCACTGGTGAGAGGACATCTCGTGAGAAAACAAGCTACTGCC ACTCTTCGGTGTATGCAAGCATTGGTGACTCTGCAGGCTAAAGCTCTGGCTCAGAGGATACGACCCGACGACGGGAAGCCCCCTTCCGGCCAGAGGCCAC ACTCTTCCCACAGGAAATCTACTCAGGAGAATCGATACAAACTCACTAATTACGATTCTGACAGGGGATTAATGGAAGAGAACATCAAGATAGTAGAAAT GGATCTAGGAGGAGGAGGAGGTCCGAAAGGAAGCACAAAGACGCACCGAAACAGCTTTTCAGATCGGAGATTCTCCTCCAACCAAATCTCACAACAACCT GATTTTCAGGTATCTCCGACTCCGTCGTCGGCATTAACAGAGATGAGCCCTAGAGCTTACAGCGCTCATTTCGAGGACCGTTCCTTCGGCAGCCCGGAAT GCTACTCAGCGATCTCGAAACCTGACTCATCCGTCGTCCCGTTCGCTCTCGAACCACAAGATTGTCCGGAATCGCTGTCGTACTACGACTACACGATGTT CCCGAGCTACATGGCGAACACGCAGTCGTCGAGGGCGAAAGCGAGGTCCCAGAGCGCGCCTAAGAGCAGACCGGAGACTTACGAGCGACAGACGAGCAGG AGAAGGCCGTCGATTGAAGGGAGGAACGGCGGCGGCGTCCCACGTGCGGTGGTGCGGATGCAGCGGTCGTCGTCGCAGGTGGGGGGATCCACCGCCGCGC AGAATCATCGCAAGTTTCCGTGGGCGGTTAATCTGGACAGATCGTCGGTTTCGGTCATGGAGAGCGAGTGTGGATCGTCCAGTACGGTGATTACCAACGC CAATTACTGCAGGTCGCTTGTCGGATTCGATGTGAGTCGGTGA
AA sequence Show only first row Show all	>Lus10021904 pacid=23158062 polypeptide=Lus10021904 locus=Lus10021904.g ID=Lus10021904.BGIv1.0 annot-version=v1.0 MGKTGKWLKSFLTGKKQNDKLRESKETCIISAKGACIISYQDSNPNLESPAATPISHPPTTPKEKRRWSFRRSSAAAATGSMANSAEPPSPLALTVVVPT TPPPAVQAQLGSEDEHKKHAMAMAAATAAAADAAVAAAQAAAAVIRLTAERNAVIEDAAALLIQSVFRSYLARKALRALKGLVKLQALVRGHLVRKQATA TLRCMQALVTLQAKALAQRIRPDDGKPPSGQRPHSSHRKSTQENRYKLTNYDSDRGLMEENIKIVEMDLGGGGGPKGSTKTHRNSFSDRRFSSNQISQQP DFQVSPTPSSALTEMSPRAYSAHFEDRSFGSPECYSAISKPDSSVVPFALEPQDCPESLSYYDYTMFPSYMANTQSSRAKARSQSAPKSRPETYERQTSR RRPSIEGRNGGGVPRAVVRMQRSSSQVGGSTAAQNHRKFPWAVNLDRSSVSVMESECGSSSTVITNANYCRSLVGFDVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	0	1
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	1.4	0.9833
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10012901 [exp]	2.0	0.9800
					Lus10032253 [exp]	4.6	0.9776
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10041188 [exp]	5.5	0.9623
					Lus10024615 [exp]	6.9	0.9737
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	6.9	0.9749
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	7.0	0.9732
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	7.1	0.9737
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	7.5	0.9721
AT1G45688			unknown protein		Lus10029743 [exp]	8.9	0.9604

Compare expression of checked genes

Lus10021904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.