Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032098 [exp] 291 / 2e-95 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 209 / 7e-65 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 214 / 3e-64 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 80 / 6e-17 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 77 / 8e-16 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 75 / 4e-15 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10031022 [exp] 72 / 2e-14 AT3G19184 96 / 4e-22 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 71 / 7e-14 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019353 [exp] 59 / 5e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140700 [exp] 112 / 2e-28 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 93 / 1e-21 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 69 / 2e-13 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 63 / 3e-11 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 62 / 8e-11 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 61 / 2e-10 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021906 pacid=23158020 polypeptide=Lus10021906 locus=Lus10021906.g ID=Lus10021906.BGIv1.0 annot-version=v1.0 ATGTACTGGGAAAATAGGTTCAATGCCAAGCATTTGCCTCGTGAGGACACAATGCTCCACTTGGAAGACGAGGATCGCAAAATTCATACCGCCAAATCAA GTAAGCACCATTTCTTTCAGGTCTACATTGTGAGGGCAAGTTGTTCAGATGAAGAGAACGTTGCTCTCGGCCTTCTGCAAATGGACAGTGATGGGGAAAA CATGATTTCCGATAACCTTACCAAAACTTACAAAGAAAGCAACTCTGAAGGCCACCAGTCTGACGATGGAGAAGAGGATGGTTTTGGATTTGACATCTCA GATGGCATAAGAATGTTTGAATCAGCAGCTATCGATTTCGAGCAAGTGAAAAGCTTCGACGACTTTGACATCGTGGTGAACGGCTTAGTTATAAACTGCG AGCTCTCCAAGCACCTTCAGGTCAAGTACTACAAACCATGCAGCAGCCAGAAGTTCGGAGCTTGGCAACAGAAGGAAGACTTTGTGACGTGGGAGACCAC TCTGTTGGCATGTGAGAAGTTGGGAATGAATGTTGAGTTCATACTCACTAGGTTGAGGCAGCTCATGGGACTTTGTGACAACCCAAGTAGGCACAAGAGG CTGAGAACTGAGAGGATTCAGATAGAAGAGGAGGTGGAGGTTTTGAAGGCGAAACTCGAGGAATCCGTCGAGAGGATTAAAAGGATAGAGGGAGAACTGG AAGTAGATGAGGTGGATGTTGAGGTGAAGTTTGGAGAATTGGCTAAAGCTCCATGGTAA
AA sequence Show only first row Show all	>Lus10021906 pacid=23158020 polypeptide=Lus10021906 locus=Lus10021906.g ID=Lus10021906.BGIv1.0 annot-version=v1.0 MYWENRFNAKHLPREDTMLHLEDEDRKIHTAKSSKHHFFQVYIVRASCSDEENVALGLLQMDSDGENMISDNLTKTYKESNSEGHQSDDGEEDGFGFDIS DGIRMFESAAIDFEQVKSFDDFDIVVNGLVINCELSKHLQVKYYKPCSSQKFGAWQQKEDFVTWETTLLACEKLGMNVEFILTRLRQLMGLCDNPSRHKR LRTERIQIEEEVEVLKAKLEESVERIKRIEGELEVDEVDVEVKFGELAKAPW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021906 [exp]	0	1
					Lus10003774 [exp]	3.2	1.0000
					Lus10003695 [exp]	3.2	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	3.9	1.0000
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	4.5	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	5.0	1.0000
					Lus10033071 [exp]	5.5	1.0000
AT5G53820			Late embryogenesis abundant pr...		Lus10007566 [exp]	5.9	1.0000
					Lus10029489 [exp]	7.7	0.9558
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	8.5	0.8686
AT1G45063			copper ion binding;electron ca...		Lus10020276 [exp]	8.8	0.6922

Compare expression of checked genes

Lus10021906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.