Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34670 362 / 8e-128 Ribosomal protein S3Ae (.1) AT3G04840 356 / 3e-125 Ribosomal protein S3Ae (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041191 [exp] 452 / 1e-163 AT4G34670 392 / 2e-139 Ribosomal protein S3Ae (.1) Lus10006609 [exp] 392 / 2e-139 AT4G34670 441 / 1e-158 Ribosomal protein S3Ae (.1) Lus10039360 [exp] 382 / 9e-136 AT4G34670 439 / 6e-158 Ribosomal protein S3Ae (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156300 [exp] 374 / 1e-132 AT3G04840 414 / 7e-148 Ribosomal protein S3Ae (.1) Potri.010G083200 [exp] 369 / 1e-130 AT3G04840 407 / 2e-145 Ribosomal protein S3Ae (.1) Potri.005G051200 [exp] 367 / 1e-129 AT4G34670 418 / 1e-149 Ribosomal protein S3Ae (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01015 [flax] [poplar] Ribosomal_S3Ae Ribosomal S3Ae family
Representative CDS sequence Show only first row Show all	>Lus10021907 pacid=23158084 polypeptide=Lus10021907 locus=Lus10021907.g ID=Lus10021907.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGGAAGAACAAGCGTATTTCGAAGAGTAAAAAGGGAGGCAAGAAGAAAGCAGCTGATCCTTTTGCGAAGAAGGATTGGTATGACATTAAAG CTCCTTCAATGTTCACCGCTAAGAGTGTGGGGAAGACTCTTGTGTCCCGTACTCAGGGTACCAAGATTGCATCAGAAGGGCTCAAGCACAGAGTGTTTGA GGTCTCTCTTGGTGAACTTCAAAATGATGAAGATCTTGCATTCCGGAAGATCAGGCTGAGGGCTGAGGATGTTCAGGGAAAGAATGTCCTGACTAATTTC TGGGGAATGGATTTCACTACGGACAAGTTGAGGTCCTTGGTCAGGAAATGGCAAAGTTTGATTGAAGCTCACGTTGATGTGAAGACCACCGACAACTACA CTTTGAGGATGTTCTGCATTGCTTTCACTAAGAGGCGGCCAAATCAGGTCAAGAGGACCTGCTATGCTCAGTCTAGCCAGATCAGACAGATCCGGAGGAA GATGAGGGAAGTCATGGTTGCACAAGCTGCAACTTGTGATCTTAAGGAATTGGTCCTTAAGTTCATCCCTGAAGCTATTGGAAAAGAGATTGATAAGGCA ACTGTTGGCATCTACCCTCTGCAGAACGTCTTCATCCGGAAAGTCCATGGTGATTACTCCGACGATGTTGGTGTGAAGGTGGAGAGAACTGCTGAAGATG AACCGATGGCTGATGCCCCTGTTGCTGAAGTTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10021907 pacid=23158084 polypeptide=Lus10021907 locus=Lus10021907.g ID=Lus10021907.BGIv1.0 annot-version=v1.0 MAAGKNKRISKSKKGGKKKAADPFAKKDWYDIKAPSMFTAKSVGKTLVSRTQGTKIASEGLKHRVFEVSLGELQNDEDLAFRKIRLRAEDVQGKNVLTNF WGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDNYTLRMFCIAFTKRRPNQVKRTCYAQSSQIRQIRRKMREVMVAQAATCDLKELVLKFIPEAIGKEIDKA TVGIYPLQNVFIRKVHGDYSDDVGVKVERTAEDEPMADAPVAEVVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10021907 [exp]	0	1
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	3.6	0.9514
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	4.5	0.9410
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	8.2	0.9279
AT1G50920			Nucleolar GTP-binding protein ...		Lus10002558 [exp]	8.9	0.9225
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10012839 [exp]	10.2	0.9278
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	10.8	0.9377
AT4G15640			unknown protein		Lus10033970 [exp]	12.4	0.9098
AT5G28060			Ribosomal protein S24e family ...		Lus10000938 [exp]	13.6	0.9269
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	16.5	0.8991
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	17.3	0.9239

Compare expression of checked genes

Lus10021907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.