Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22790 639 / 0 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 564 / 5e-174 kinase interacting (KIP1-like) family protein (.1) AT1G03080 305 / 3e-84 kinase interacting (KIP1-like) family protein (.1) AT4G02710 218 / 1e-57 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 122 / 8e-29 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 121 / 3e-28 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT2G22560 123 / 4e-28 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 117 / 3e-26 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 116 / 7e-26 Kinase interacting (KIP1-like) family protein (.1) AT1G03470 102 / 2e-23 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041192 [exp] 2189 / 0 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 982 / 0 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 342 / 4e-96 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006606 [exp] 296 / 3e-86 AT3G22790 368 / 3e-111 Kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 286 / 2e-78 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 275 / 1e-74 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 228 / 3e-61 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 121 / 2e-27 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 121 / 2e-27 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083300 [exp] 774 / 0 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 520 / 2e-157 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 520 / 2e-157 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156200 [exp] 412 / 3e-122 AT3G22790 762 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 242 / 1e-68 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 130 / 4e-30 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 127 / 3e-29 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 124 / 4e-29 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 122 / 3e-28 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G106400 [exp] 121 / 2e-27 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10021908 pacid=23158035 polypeptide=Lus10021908 locus=Lus10021908.g ID=Lus10021908.BGIv1.0 annot-version=v1.0 ATGGAAACCTTACTTTCTTCTGAGGACAGCACTCGGCTTTACTCATGGTGGTGGGACAACCCCATCCTCAAGAACTCCAAATGGCTTCACCAAAATCTTA CAGATATGGATGCAAAAGTTAAAGCAATGATCAAACTGATAGAGGAAGATGCAGACTCGTTCGCCAGGAGGGCCGAAATGTACTATAAGAAACGCCCAGA ACTGATGAAGCTGGTAGAGGATATCTATCGAGCTTACCGCGCATTAGCAGAAAGGTACGACCATGCAATAGCTGAGCTTCGCCATGCTCAGGAGGTGTCC GGTGGAACTGCTGATTATTCTGAAAAAACTCATATACCGGAAATGTCTCGTGCACTTCGCACCTTGCTCGATTTCGATGACTTGAAGCACAAGGATCCTG AAGAAGCAGAAGTCCAAACCTTGAAGAAAAATCTTGGTGAGATTGAAGCTGAAAAGGAGGCTCTTCTTGAGAAACTATCTTGTCTAGAGAAGGAACTCGA GAATACCGGGGGACTTAAAGAACGAGCAAGTAGAGCCGAGATCGAGATTAGCATCCTGAAGGAGACACTCTCCAAATTAGAAGGTGAGCGAGATTCTGAT CTGGTTCGTTACAACGATTGTTTGGGGAAGATATCAGAGCTTTACGACCGAGCAATCAAAGCGGAAACAGAATCACAGAATCTCAAACAAGAGCTTTCAG GATTGGAGGTGGAAAAGGAATCTCTTCTTCTTCAGTACAACCATTGTCTTGAGATGATATCACTTTTAGAGAGGAGAATTTCACTTGCTGAGGAAAATGC CAGGATGCTTAATCAGCTTGCTGAGAAAGCAGAAACTGAAGTTAATTCTCTGAGAGAAACTATTACGGAATTGGAGAAGGAGAAAATTTGTCAAGAATCA CAAAAGAATTCAAATGAATCTCTGAAGTTAGAGGCGGAAAATTTGTTGCAAAGGATAGCAGTGAAGGATCAACAAATGTCAAAGAAGGGATTTGAGTTGG AAAAGCTTCATACTTTACTGGAAGAGGAGAAGTTGCAGTTCGCTCAAGTCGAAGCCAATCTGCAAACGTTGCAGAAACTGTATTCAAGAACACAGGAGGA GCAGAAAGCTTTAACAGTAAAGCTGGAGACCAAGCTTCAAATGTTGAAAGATGCGGAGACATTGAACCGGAATCTGCAAGAGGATCTGAACCGAGTGGAG GATGAGAATCTCAGCCTGAAAGAACTTAACACCTCTTCGAGCATTTCCATGACGAACTTGCAAAACGAAATCTCGTGCCTGAAGGATATGAAGGAGGAGC TTGAAGATGAAGTTAGAGTACAAGTAAACCAAACTGATTGTCTGCAACGGGAAATTTCCCGGTTGAGGGAAGAGATTGATGCCTTGAACAGCAAGTGTCA GGGTTTAATAGAGGATAATTTCAAGCTAAGAGATGTTTGTGAAAAGGATAGAGTTGAAAACCAAGCTCTGAATGAAAAATTAGAAGGCTCAAGAGATAAG GTGATGGAATTGCAGGAATCTTGCAAGATCCTTGAGGGGGAGAAAACTGGACTGGTTGCTGAAAAGGGAATCTTGCTTTCCCAGCTTCAGCTAATAAATG AGAACATGAAGAAAGTGTTGGAGAAAAATGCATCGGTTGAGAATCTTCTTTCTGGTGCTAATGTTGAGCTGGAAGATCTAAAGGTAAAGAGCAGAAGCCT AGAAGAGTTGTGTGAAATGCTCAAGAGTGAAAGATCCAAACTTTCGAGCGAGAAAAGCACGTTAGTATTTCAGCTCGAAGCTGTTGAGCTAAGACTTGGA AACCTCGAAAGTAAGTTCACAAGACTGGAAGAAAATTTTACTGATCTTGAGAAGGAGAAAGAATTCACAATCTTCCAGGTTAAAGAACTGTATGGATATC TCGGAATCGAGAAACAGGAGCGTGCATGCTACACACTGGCAAGTGAGTCCCGGTTGACCGATCTGGAAAACCAGGTCCGGTTGAGGAAGAAAGAAAGTGA AGAAGAGCTTGATAAATCTGTGAATGCTCAGATTGAGATCTTCATCTTACAGAAGTTCATGGAAGATTTAGAACAGAAGAATCTGGCACTATTGATTGAG TGTCAGAGAAATTCTGAGACTTGTAAAATGTCGAAGAACGTGATATCGGAATTGGAGGCTGAGAATCTGGAGCAGCAGGTGGAAATGGAATTCCTGTTGG GTGAGATTGAGAAGTACAGGAATGGTGTTCATCAGATTTTCCAGTCACTTCAGCTTGATCCATGCCATGAACAAGGAATTACCAGCGAAGAACAACGCAT TTCCTTTGCGCATATGTTGCATAATATTGAGGACCTGAAGGATGAGAAGCAGTTAATGGCGGTTGAGAACATGGTGGTTTCAACTTTATTTGAACAGTTG GAATCTGAGTGTACCATGCTTCAAATGGAAAATCGTGAATTTAAGGAGATGAATAGACAGTTGAAATCGGAAGTGATCCGAGGAGAGCAGCAGAATGGAG GATTAAGGATCGAGTTGGAAACTCGGAATTCGAAACTGGAAAGTCTACAGGATTCTTACATCTCACTGCAAGTAGAAAACTTTCAAATGCTTCAAGAAAA TAACTGTCTAAAAAAGAGGTTTTCAGACCTGAAAAGGGATATGGACGAACTCGAGGATGAAGCAATCTCTCTGGCAAGCCTCTCTTCTGTTTATGAGAGC GTTGCAATGCAGAAAAGCGAGGAACTTGAATCGCTTTCACAAGTGGAGCAAAACCTGACGGCCACTCAGGAGCAGTTGAATGTCGAATTATGCAGAATGA ATGAGGATTTGAAGAGGGAGTCTGAAGAATCTATTGCAGTTAGAGAAAAGTTAGAGAAGCAGATTGGAGAGTTGCGCAAGGAAATTGATGAACGCAGGGT TCGAGAAGAGACCTTGGGTCTGGAGCTGCATGAAAGAAGCAATGAGTTTGAACTATGGGAGGCTGTGGCTTCATCTTTTTACTCCGATCTTCAGATATCG TCCATTCGCGAGGTTATACTCGAAAACAAAGTTTATGAGCTCTCTGAATTTTGTGCTAGCCTTGAAGATGAAAGGGCCACAAAAGATTTGGAGATTCGCC AGATGAATGAAAAGTTCGGTCATTTGCAGAGTGAAATCCAAGGACTGAAGTCTCAGCTTTCTGCATATGCTCCAGCTATAGCTTCCTTGAAAGATAACAT TGATTCCCTGGAGCAGAATGCTCTTTTTCGGATGAATCTTTCTACAGATGGTGATCAAAACCTGAAGGAGCTTGAAATTGTTTCTGAATATTGTGAAGCG AACAATGAGCCAACTGGAACCACCATAGATGGTATCTCGGATTTGATGAAAATGCTACCCAAAGTTAAAACAGTGGAGAAGGCAATAACTGAGGAAATCG GAAGGCTTGAAGCTGAGAAGGCGATAGTCGAAAAGGAGAAACTCGAAATGCTAGTGAAGAAGGCGAAGTCGAGGAGGCAGAAGAGATCAAGTCTGGGAGG CAGCAGTTTTAACAAGAATGACATAGTGGCCGAGAATGATTCAACCGACGGTGGCAACATACGAAAGAACATCAGCGAGATATCCGAAGTACCAGATGAC GATATTCTGATGAAAGACATTCAACTCGATCAGGTCTCAGGCGGCAGTTCTTCGCGGAGAAAGAGCAACGGGGGGATTTCCAAGGCTGCTGATCAGATGC TTGAAATATGCGAATTAACAGACAAAGACAGCACCAGAGGTCCAAGACAGAAGAGTGCTTCTTCTGAGAAGGAAGTTGGGATTGACAAGATGGAAGCAAG CAAAGAGACATACGGCAGGAAGAACATGGAGAGGCTTACTTCGGATGCTAACAAGTTGGAAGCTTTGTACTCGTCCGTTCAAGATATGAAGAAGAAGCTG GTGATGACAAAGACAACTACAAGTGGGAAGAAGATCAGCAACAATGAATTGGTGGAAAAGATGAAAACAAGGCTGCAAGAGGTGGAAGAGGCAGTGGTGC AGTTGGCTGAAGGTAATGACCAGCTCAGAAAAGATACTGGAGAGGGACCCTCATCAACTCCACAAGGGAAGAGCCAAGGAGTAAGTGAGCAAGCAAGAAT AGGATCGGAGAACATCGGACGGTTGGAGTTTGAAGTGAAGAACATTCAGTACATTCTGCAGAAAATTGACGAGCACGAGAACAAGAGCAGAAAGAACAGA GTGCAGAGGTTCTATGGGAACAGGACTGTTATTCTGCTGAGGGACTGGATCAGAATGTGA
AA sequence Show only first row Show all	>Lus10021908 pacid=23158035 polypeptide=Lus10021908 locus=Lus10021908.g ID=Lus10021908.BGIv1.0 annot-version=v1.0 METLLSSEDSTRLYSWWWDNPILKNSKWLHQNLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEDIYRAYRALAERYDHAIAELRHAQEVS GGTADYSEKTHIPEMSRALRTLLDFDDLKHKDPEEAEVQTLKKNLGEIEAEKEALLEKLSCLEKELENTGGLKERASRAEIEISILKETLSKLEGERDSD LVRYNDCLGKISELYDRAIKAETESQNLKQELSGLEVEKESLLLQYNHCLEMISLLERRISLAEENARMLNQLAEKAETEVNSLRETITELEKEKICQES QKNSNESLKLEAENLLQRIAVKDQQMSKKGFELEKLHTLLEEEKLQFAQVEANLQTLQKLYSRTQEEQKALTVKLETKLQMLKDAETLNRNLQEDLNRVE DENLSLKELNTSSSISMTNLQNEISCLKDMKEELEDEVRVQVNQTDCLQREISRLREEIDALNSKCQGLIEDNFKLRDVCEKDRVENQALNEKLEGSRDK VMELQESCKILEGEKTGLVAEKGILLSQLQLINENMKKVLEKNASVENLLSGANVELEDLKVKSRSLEELCEMLKSERSKLSSEKSTLVFQLEAVELRLG NLESKFTRLEENFTDLEKEKEFTIFQVKELYGYLGIEKQERACYTLASESRLTDLENQVRLRKKESEEELDKSVNAQIEIFILQKFMEDLEQKNLALLIE CQRNSETCKMSKNVISELEAENLEQQVEMEFLLGEIEKYRNGVHQIFQSLQLDPCHEQGITSEEQRISFAHMLHNIEDLKDEKQLMAVENMVVSTLFEQL ESECTMLQMENREFKEMNRQLKSEVIRGEQQNGGLRIELETRNSKLESLQDSYISLQVENFQMLQENNCLKKRFSDLKRDMDELEDEAISLASLSSVYES VAMQKSEELESLSQVEQNLTATQEQLNVELCRMNEDLKRESEESIAVREKLEKQIGELRKEIDERRVREETLGLELHERSNEFELWEAVASSFYSDLQIS SIREVILENKVYELSEFCASLEDERATKDLEIRQMNEKFGHLQSEIQGLKSQLSAYAPAIASLKDNIDSLEQNALFRMNLSTDGDQNLKELEIVSEYCEA NNEPTGTTIDGISDLMKMLPKVKTVEKAITEEIGRLEAEKAIVEKEKLEMLVKKAKSRRQKRSSLGGSSFNKNDIVAENDSTDGGNIRKNISEISEVPDD DILMKDIQLDQVSGGSSSRRKSNGGISKAADQMLEICELTDKDSTRGPRQKSASSEKEVGIDKMEASKETYGRKNMERLTSDANKLEALYSSVQDMKKKL VMTKTTTSGKKISNNELVEKMKTRLQEVEEAVVQLAEGNDQLRKDTGEGPSSTPQGKSQGVSEQARIGSENIGRLEFEVKNIQYILQKIDEHENKSRKNR VQRFYGNRTVILLRDWIRM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	0	1
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	1.4	0.9763
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	2.0	0.9712
AT5G42710			unknown protein		Lus10016315 [exp]	2.4	0.9721
AT5G42710			unknown protein		Lus10010807 [exp]	2.8	0.9665
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	4.0	0.9730
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	4.2	0.9636
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	4.9	0.9672
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	6.5	0.9527
					Lus10003428 [exp]	6.9	0.9261
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	7.0	0.9668

Compare expression of checked genes

Lus10021908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.