Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14805 77 / 8e-17 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G43720 40 / 0.0008 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010576 [exp] 144 / 1e-42 AT4G14805 87 / 5e-21 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10042984 [exp] 41 / 0.0002 AT1G73890 81 / 3e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032488 [exp] 40 / 0.0005 AT1G73890 84 / 2e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085000 [exp] 93 / 4e-23 AT4G14805 105 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G155300 [exp] 69 / 7e-15 AT4G14805 59 / 2e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.015G053700 [exp] 39 / 0.001 AT1G73890 113 / 2e-31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.015G054000 [exp] 39 / 0.001 AT1G73890 113 / 2e-31 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021910 pacid=23158053 polypeptide=Lus10021910 locus=Lus10021910.g ID=Lus10021910.BGIv1.0 annot-version=v1.0 ATGTCACTCGTTTTTGCGTTAATCCTCACCGTCGTACTCTTCCTCACCGCTGTCGCCTCTCCATCGCCCCCGTCACCGCCATCGGATGACTGCGTCGCCG ACCTGGCTGCTTTCTCCCCCTGCTTCGCCTACGTTTCGGTGCGACCTAACAAAGTTCATTACAGAGTCAACCGTCAGTGCTGCCGAGTCGTATCGGAGGC GTTCACTTCCGGCGGAAGCAACTGCTTCTGTCACCTGATGAAGCAGCCGTTGCTGTCCGGGTTCCCGCTCAATCGAACCAGAATCGCGTCCCTTCCTTCT CTCTGTTCCCACTGGAGCAAGAACGCCAGCTCATCCATGAAGAATTTCGGTTCCATGAAGTCGATCTGTACAGCTGTGCCTCCTTCTGTTCCAAGCTTGA AGGGTTCATTAGGAGTGCCGACTTCACCTCATCCTGCTCCTGAATCTGGCGATGATACATCTGACATAATGGGTCCTCGTCCGCCAACTGAATCCCCCTC TCCCTCTGTAGCAGCTCCTCATAATCGGACACTTGCTCCAGCAAATCCACCAGCTGCGTCTAGCAAACCTTCATCTGCATCATCCGCTACCAGCCCTCGT CTCCTCCCACATCATCCTCATGCCTTGTCGCCACCAGCTTCATCAATAGCAGCAAAACTGAGCTTCAGTAGCACTTGGACTTCTCGTGGAGTAGCCTTCT GTTTGGCGTTGTCACTCGCTCTATAG
AA sequence Show only first row Show all	>Lus10021910 pacid=23158053 polypeptide=Lus10021910 locus=Lus10021910.g ID=Lus10021910.BGIv1.0 annot-version=v1.0 MSLVFALILTVVLFLTAVASPSPPSPPSDDCVADLAAFSPCFAYVSVRPNKVHYRVNRQCCRVVSEAFTSGGSNCFCHLMKQPLLSGFPLNRTRIASLPS LCSHWSKNASSSMKNFGSMKSICTAVPPSVPSLKGSLGVPTSPHPAPESGDDTSDIMGPRPPTESPSPSVAAPHNRTLAPANPPAASSKPSSASSATSPR LLPHHPHALSPPASSIAAKLSFSSTWTSRGVAFCLALSLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10021910 [exp]	0	1
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	9.5	0.8090
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	13.8	0.7810
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10042672 [exp]	15.7	0.7768
AT5G65380			MATE efflux family protein (.1...		Lus10015903 [exp]	18.3	0.7651
AT2G41000			Chaperone DnaJ-domain superfam...		Lus10004491 [exp]	19.4	0.7273
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10039900 [exp]	19.8	0.7521
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	20.3	0.7788
					Lus10013471 [exp]	27.4	0.7587
AT2G37240			Thioredoxin superfamily protei...		Lus10019900 [exp]	29.0	0.7760
AT5G66780			unknown protein		Lus10024013 [exp]	29.9	0.7714

Compare expression of checked genes

Lus10021910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.