Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22590 473 / 4e-167 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041198 [exp] 674 / 0 AT3G22590 547 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10010571 [exp] 543 / 0 AT3G22590 526 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10039347 [exp] 316 / 5e-109 AT3G22590 295 / 2e-100 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10026680 [exp] 137 / 9e-39 AT3G22590 63 / 1e-11 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085500 [exp] 506 / 3e-180 AT3G22590 555 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Potri.008G155000 [exp] 362 / 9e-126 AT3G22590 385 / 3e-134 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05179 [flax] [poplar] CDC73_C RNA pol II accessory factor, Cdc73 family, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10021913 pacid=23158045 polypeptide=Lus10021913 locus=Lus10021913.g ID=Lus10021913.BGIv1.0 annot-version=v1.0 ATGGATCCGCTTTCAGTCCTCCGTGAATACACCATGCGCGGCGACCTGGACAAGATCGTCAGAGTGAACAACGAGTTCCGATTCGGCTCCGACTACTCAT TCCCTTGCTCCGCCGAAACTGCATACCGATCCAACAAAGGAAACCTCTTCACATTGGAAACGCTCGTTTATTACATCCAGAACGCCCAGCTCAAGCACAC CGACTACTTCCAGAGCTGCCGCGCCCTCGGAATCCCCGCAATCACTTTCGTCGAGAGAAATCTGGGTGGTCACGACTATTACCGTCCCGAGGAAGGAGCG CTTGTTGATTCCGTCAACGACGCCGTGTATACTGCCGGGAATGGTAAACCGGTGGATTATCTTTCTCTGATCTACTCGACGGAGAAGCCGTTGAAGGATA GGGAGTCGTTATTGGAGTGTAAGAACAAGGATTTCTACAGCGTGTTGGTGTCTTCTACTAAGAGGGAGGAGGAAAGGCAGAGGATTGAATCGCAACAGAG GAAAGATGGATTGGTGTCGTCCAAGAGTAGATTGATGGGAGGTGATGACAGAGGAGGGGGTGGATATGGTGATGATATGCCGAAGCTCAGAGGGAAAACT GGGGAAGGAGTGCCTATCATTTTGGTGCCTAGCGCATTCCAGACGTTGATTACTATTTACAATGTGAAGGAGTTTCTGGAGGATGGAGTATACGTACCTA CTGATGTGAAGGTGAAGCAAATGAAAGGGGCGAAGCCGGAGTGTGTGACTGTGCAGAAGAAGTTTAGTACTGATAGGAATAGGGTGATGACTGCGTATGA GGTTAGGGATAAACCTTCTTCTCTTAAGTCTGATGATTGGGACCGGGTTGTGGCTGTTTTCGTGTTGGGGAAGGAGTGGCAGTTCAAGGATTGGCCTTTC AAGGATCATCTAGAGATATTTAATAAGATTGTTGGGTTCTTCGTGCGGTTTGAAGATGACAGCATTGAGTCTGCAAAAACTGTTAAGCAATGGAATGTAA AGATTGTATCGATAAGCAAGAACAAGCGGCATCAAGACCGGACAGCTGCTTTGGAGGTGTGGAACAGACTAGAAGAATTTGTGCGATCAAGATCACATTC TTGA
AA sequence Show only first row Show all	>Lus10021913 pacid=23158045 polypeptide=Lus10021913 locus=Lus10021913.g ID=Lus10021913.BGIv1.0 annot-version=v1.0 MDPLSVLREYTMRGDLDKIVRVNNEFRFGSDYSFPCSAETAYRSNKGNLFTLETLVYYIQNAQLKHTDYFQSCRALGIPAITFVERNLGGHDYYRPEEGA LVDSVNDAVYTAGNGKPVDYLSLIYSTEKPLKDRESLLECKNKDFYSVLVSSTKREEERQRIESQQRKDGLVSSKSRLMGGDDRGGGGYGDDMPKLRGKT GEGVPIILVPSAFQTLITIYNVKEFLEDGVYVPTDVKVKQMKGAKPECVTVQKKFSTDRNRVMTAYEVRDKPSSLKSDDWDRVVAVFVLGKEWQFKDWPF KDHLEIFNKIVGFFVRFEDDSIESAKTVKQWNVKIVSISKNKRHQDRTAALEVWNRLEEFVRSRSHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10021913 [exp]	0	1
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	2.8	0.8108
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	3.9	0.8224
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	7.1	0.7973
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036840 [exp]	10.4	0.7066
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	10.6	0.7581
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	12.2	0.7941
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	14.1	0.7577
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	15.0	0.7412
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	16.2	0.7729
AT2G44600			unknown protein		Lus10043351 [exp]	16.3	0.7333

Compare expression of checked genes

Lus10021913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.