Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22560 216 / 1e-72 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G32030 182 / 6e-59 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G32020 178 / 2e-57 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041199 [exp] 181 / 1e-59 AT3G22560 128 / 7e-39 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10010570 [exp] 172 / 3e-55 AT2G32030 220 / 7e-74 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10039344 [exp] 166 / 1e-52 AT2G32030 236 / 4e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10039343 [exp] 162 / 5e-51 AT3G22560 151 / 1e-46 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10010569 [exp] 148 / 2e-45 AT3G22560 144 / 7e-44 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10006668 [exp] 137 / 4e-41 AT2G32030 122 / 2e-35 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10032323 [exp] 121 / 1e-34 AT2G32030 107 / 6e-29 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10007013 [exp] 105 / 2e-26 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10039346 [exp] 94 / 5e-25 AT2G32030 116 / 6e-34 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G154800 [exp] 284 / 2e-99 AT3G22560 225 / 3e-76 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G154700 [exp] 220 / 5e-74 AT3G22560 177 / 3e-57 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G085600 [exp] 169 / 8e-54 AT2G32030 223 / 6e-75 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.007G102900 [exp] 101 / 9e-28 AT3G22560 96 / 9e-26 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10021914 pacid=23158068 polypeptide=Lus10021914 locus=Lus10021914.g ID=Lus10021914.BGIv1.0 annot-version=v1.0 ATGGACCCATCGAGAATTACCCTCCGTCCATTCAAACTCTCTGACGCGGATGACTTCCTCAAATTCGCCGGCGACGACAGGGTAACCCGGTACCTGAGAT GGAACTCCATGACCTCAAGGGAAGAAGCGTTGACCCATCTGGAAACAGTGACAATCTCACATCCATGGCGCCGATCCATCTGCTTAGATGACCGCTCAAT TGGGTACATCTCGATTTTCCCCGGGTCGGGCGACGATCGGAGCCGGGCGAACGCTGCGTACGCTCTGGCGGTGGAGTACTGGGGGCAGGGGATCGTCACG GCCGCCCTGAGGATGGCCCTGTCCACCGTTTTTAGGGACCTTCCAGAGATTGTGAGGCTTCAGGCGCTGGTGGAAGTGGACAACAGAGGTTCTCAGAGGG TACTGGAAAAAGTTGGGTTCTTGAAGGAAGGTTTGCTGAGGAAATATGGGTACAACAAAGGTGAGATTAGGGATCTTATCGTTTACAGCTTCTTGTCGAC TGATGAAATTGCTGTTGAATGA
AA sequence Show only first row Show all	>Lus10021914 pacid=23158068 polypeptide=Lus10021914 locus=Lus10021914.g ID=Lus10021914.BGIv1.0 annot-version=v1.0 MDPSRITLRPFKLSDADDFLKFAGDDRVTRYLRWNSMTSREEALTHLETVTISHPWRRSICLDDRSIGYISIFPGSGDDRSRANAAYALAVEYWGQGIVT AALRMALSTVFRDLPEIVRLQALVEVDNRGSQRVLEKVGFLKEGLLRKYGYNKGEIRDLIVYSFLSTDEIAVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	0	1
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	3.2	0.9246
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	3.7	0.9334
AT4G33740			unknown protein		Lus10020507 [exp]	5.1	0.9311
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10006644 [exp]	6.8	0.9018
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10041075 [exp]	8.0	0.9048
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	9.4	0.9247
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	11.7	0.9262
AT1G24560			unknown protein		Lus10013022 [exp]	12.5	0.9101
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10006508 [exp]	13.0	0.8906
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	15.5	0.9231

Compare expression of checked genes

Lus10021914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.