Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05410 380 / 7e-128 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G22520 107 / 1e-24 unknown protein AT4G14840 96 / 8e-21 unknown protein AT3G07780 55 / 7e-08 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G48160 53 / 3e-07 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G57380 45 / 0.0002 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041201 [exp] 504 / 8e-177 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10010550 [exp] 477 / 1e-165 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10004900 [exp] 278 / 1e-89 AT1G05410 207 / 6e-63 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041202 [exp] 106 / 2e-24 AT3G22520 327 / 1e-104 unknown protein Lus10010551 [exp] 104 / 3e-23 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006124 [exp] 102 / 9e-23 AT3G22520 340 / 4e-106 unknown protein Lus10012327 [exp] 54 / 3e-07 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 54 / 3e-07 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086600 [exp] 447 / 7e-154 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G086700 [exp] 124 / 3e-30 AT3G22520 320 / 5e-102 unknown protein Potri.008G153800 [exp] 118 / 2e-28 AT4G14840 329 / 7e-106 unknown protein Potri.002G221500 [exp] 51 / 1e-06 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 51 / 2e-06 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021915 pacid=23157974 polypeptide=Lus10021915 locus=Lus10021915.g ID=Lus10021915.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAACCAAACAAAACTGAGGAAAGCAATGGATGTAGTACGCTTAAGGAAATCCCTTTCCGTCTAAGAGTAGTTCCAGGTTATGAGTCTGGCG AAGGTTGGCCTTATGCTCCTGAGAATTGGCCAAATCCTGGAGACACGTGGGGTTGGAAAGTGGGGAACCGCCAGAGTTTCTCTGGGTATCACGTGGATAG ATTTCTATACCTCCCGAAAAGTCTCCACCATCTTCCTTCTGTTTCGAGTCGTGTAAAGAACGGTTTTGCGAGCAAGCTCGCGGTGCAGATGTTCATTGAA AAGCATTTCCCTGGTGCGGATATCAAGGCCTTCTTTGCTTCATTTGTCTGGAGGATCCCTTCTCACCATGCCTCCATGAAAAGATTTAAGAACAGGAGTG CTTCTACAGAAGACCTTGATAGCAGTCCCTTCCATGTGCTTCCTGCAGTCACTTTAGGGCAGCCCGTTGATCCCCAGTCTAACGATGGGAGATGCAAGGC AGGAAATGAGATTTGCAGCAGTCTCGAGGAGGCTGCAGAAATTGAACCTTTAGCTGCAGTACCTTGTGATATTTGCTGCGACGAGCCCGGCTTTTGTCGT GATTGTTGCTGTATTCTCTGCTGTAAAACCGTTAGTCCTGCACATGGTGGTTACAGTTATGTCAAGTGTGGTGCCGTAGTAACTGAAGGCTGCTTCTGTA CTCATGTAGCACACCTTGAATGTGCTCTGAGGATTTACATGGCGGGAACAGTTGGAGGAAGCATCAGTCTTGATGCTGAGTACTTTTGCCGACGTTGTGA TGCAAAGACTGATCTTGTTCCACATGCTCTGAAGCTTTTACAAACTTGCAAGTCAATGGATTCCCGAGAGGAAATACAGAAACTTCTAAATCTTGGCATC TGTATTTTGCGTGGAACTCGGAGAAACAATGCTGGGAATTTGCTGAAACGCATCGAAACAGCTGCAACAAGGCTCAAGCATTGTACTACCCTTGAAGATG TATGGAAAGTTGATGAAGAAGAAGCACCAGCTATTTGCTATGATTTGGCGTCCAAGTCTCCTGATTACAGTGCTGAAATTCTGGCACTTGATTCCGAGAT CCACGTTGTGCTCCATGCACTAAGAGATGCTCAGGAACTTGAATACAAGACTGCGGAGGAACAGCTTGTTCGGCAGAAGAAATATGTGCAAAATCTCTAC CAACAACTTGAGAAAGAGCATGCTGAACTAGCAAACATGAAATCAGGGAGGATGGGAGAAGGATTGTTGAGAACAGTAACGTGCAGGATTGATCAGATAA ATTGGGAGAGGAAGAAGCTGAGGCGTATGGGAAAGGTGGCCAACGGTTTTGGAAGGACCTCCAAAGCTATTATGAGGGAATTCTTCGGCTTTGAATTTGA GAAAAAACCTAGGAAAAGGGAGGATCCTGGGGCGCAATTGTGA
AA sequence Show only first row Show all	>Lus10021915 pacid=23157974 polypeptide=Lus10021915 locus=Lus10021915.g ID=Lus10021915.BGIv1.0 annot-version=v1.0 MGKKPNKTEESNGCSTLKEIPFRLRVVPGYESGEGWPYAPENWPNPGDTWGWKVGNRQSFSGYHVDRFLYLPKSLHHLPSVSSRVKNGFASKLAVQMFIE KHFPGADIKAFFASFVWRIPSHHASMKRFKNRSASTEDLDSSPFHVLPAVTLGQPVDPQSNDGRCKAGNEICSSLEEAAEIEPLAAVPCDICCDEPGFCR DCCCILCCKTVSPAHGGYSYVKCGAVVTEGCFCTHVAHLECALRIYMAGTVGGSISLDAEYFCRRCDAKTDLVPHALKLLQTCKSMDSREEIQKLLNLGI CILRGTRRNNAGNLLKRIETAATRLKHCTTLEDVWKVDEEEAPAICYDLASKSPDYSAEILALDSEIHVVLHALRDAQELEYKTAEEQLVRQKKYVQNLY QQLEKEHAELANMKSGRMGEGLLRTVTCRIDQINWERKKLRRMGKVANGFGRTSKAIMREFFGFEFEKKPRKREDPGAQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05410			Protein of unknown function (D...		Lus10021915 [exp]	0	1
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	3.6	0.8969
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	6.0	0.8953
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	7.3	0.8852
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	7.4	0.8690
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	7.9	0.8842
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	8.1	0.8924
AT1G13880			ELM2 domain-containing protein...		Lus10000680 [exp]	8.8	0.8545
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	10.2	0.8876
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	12.6	0.8840
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	15.5	0.8924

Compare expression of checked genes

Lus10021915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.