Plant FIBer expression Database

Lus10021916 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22520 129 / 5e-36 unknown protein
AT4G14840 125 / 1e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000233
[exp]
252 / 7e-87 AT3G22520 215 / 1e-66 unknown protein
Lus10041202
[exp]
252 / 2e-82 AT3G22520 327 / 1e-104 unknown protein
Lus10006124
[exp]
190 / 5e-57 AT3G22520 340 / 4e-106 unknown protein
Lus10010551
[exp]
186 / 1e-55 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G153800
[exp]
150 / 1e-43 AT4G14840 329 / 7e-106 unknown protein
Potri.010G086700
[exp]
148 / 6e-43 AT3G22520 320 / 5e-102 unknown protein
PFAM info
Representative CDS sequence
>Lus10021916 pacid=23158063 polypeptide=Lus10021916 locus=Lus10021916.g ID=Lus10021916.BGIv1.0 annot-version=v1.0
ATGCTTGAGTCGAACAAATCCAAGGTGGCTACTCTCAAGAGCGAGTATAGCAAACTGAAGGAGAAAACGGACCAACTTCAGGGCCAGATAAATGCCAACT
TGTCGACCGTAGATGAAATTAATAAGGAAATCGCCAGACTTCAAGCGCAGAGAGGAGAGCTGATCCGTGCAGTGGAATCTAACAAAGCTGCTAAGGTAGA
GGTGAACTATGCTCAGAAAATGGCGGCGAATGCTATTCCGAATGTGGTGCATGAGATTCAGAATTCCAACTCGAAGATCCCTGAATGGGATTTGACGATG
AACAATGCAGTGAAGCGGGAAGCGGAAATCCGTTCCAAGTTTGCACCTTTGCAAGGGTTCTCGCTTATTCCACCACCCTTTCAGGGATTATTCCTTTAA
AA sequence
>Lus10021916 pacid=23158063 polypeptide=Lus10021916 locus=Lus10021916.g ID=Lus10021916.BGIv1.0 annot-version=v1.0
MLESNKSKVATLKSEYSKLKEKTDQLQGQINANLSTVDEINKEIARLQAQRGELIRAVESNKAAKVEVNYAQKMAANAIPNVVHEIQNSNSKIPEWDLTM
NNAVKREAEIRSKFAPLQGFSLIPPPFQGLFL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22520 unknown protein Lus10021916
[exp]
0 1
AT3G24440 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, ... Lus10043251
[exp]
3.9 0.8601
AT5G16030 unknown protein Lus10017573
[exp]
11.0 0.8217
AT4G11130 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1... Lus10002361
[exp]
21.6 0.8297
AT2G39190 ATATH8 Protein kinase superfamily pro... Lus10040390
[exp]
24.7 0.8273
AT1G53800 unknown protein Lus10003930
[exp]
30.0 0.8232
AT4G00020 BRCA2(IV), BRCA... MATERNAL EFFECT EMBRYO ARREST ... Lus10017785
[exp]
33.2 0.7764
AT4G21770 Pseudouridine synthase family ... Lus10007657
[exp]
34.4 0.8247
AT2G13440 glucose-inhibited division fam... Lus10014348
[exp]
37.0 0.8188
AT1G23360 MENG S-adenosyl-L-methionine-depend... Lus10029124
[exp]
38.4 0.8234
AT1G23400 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG O... Lus10029134
[exp]
39.0 0.8082

Lus10021916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.