Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 125 / 2e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041203 [exp] 237 / 2e-81 AT3G22430 186 / 2e-57 unknown protein Lus10020567 [exp] 50 / 1e-07 AT3G22430 129 / 8e-33 unknown protein Lus10019214 [exp] 46 / 2e-06 AT5G23570 515 / 2e-179 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10004302 [exp] 46 / 2e-06 AT5G23570 517 / 4e-180 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10006278 [exp] 45 / 9e-06 AT3G22430 132 / 2e-32 unknown protein Lus10011024 [exp] 43 / 4e-05 AT5G41150 1233 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152900 [exp] 143 / 3e-41 AT3G22430 409 / 2e-138 unknown protein Potri.010G087400 [exp] 139 / 1e-39 AT3G22430 418 / 3e-142 unknown protein Potri.010G235700 [exp] 56 / 7e-10 AT3G22430 125 / 4e-30 unknown protein Potri.018G137400 [exp] 51 / 5e-08 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 51 / 6e-08 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 50 / 1e-07 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.009G147201 [exp] 46 / 3e-06 AT3G22430 148 / 3e-37 unknown protein Potri.008G024500 [exp] 44 / 2e-05 AT3G22430 127 / 1e-30 unknown protein Potri.003G188350 [exp] 42 / 6e-05 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187800 [exp] 40 / 0.0003 AT5G23570 226 / 4e-67 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10021917 pacid=23158038 polypeptide=Lus10021917 locus=Lus10021917.g ID=Lus10021917.BGIv1.0 annot-version=v1.0 ATGATGTGGCTTTCAGCTCTTGGATTTCCCGGGGGCAAGTCGAAATCAATGTATGGTAGAGAAGGGCATCAAGGAACAACTCATGTAAAGTTTGCGGGCG ACACGCCTGGCCTAAGAGAAGCTGTTGGGCTGTCAGGTCACTTTGCGAAACAAAATTGCGGACGCAATGCATGGGAACGTGTACAAGCAGCAATGGGAGG GAAAAGCGACGATAGGAATCCAGACCTTGTGAAGGTGGATCGCAACGGGGATAAAACCAAGGTTCTCTACGGTTACCTTGCCACAGCTGCTGATCTTCCC AGGTTTGATTTCGATACGAAAAAGAAGCTCACACTTGAGAGTGTGCGAGAGTATGAAGGATTCCGAGTTGGTCGTCCCACGAGGGGATATGTGTGGAGAG GGAAGGTGTGGGGGGGGGGAAGTGGTGGGGGGGGGGGGGTGTGTTAA
AA sequence Show only first row Show all	>Lus10021917 pacid=23158038 polypeptide=Lus10021917 locus=Lus10021917.g ID=Lus10021917.BGIv1.0 annot-version=v1.0 MMWLSALGFPGGKSKSMYGREGHQGTTHVKFAGDTPGLREAVGLSGHFAKQNCGRNAWERVQAAMGGKSDDRNPDLVKVDRNGDKTKVLYGYLATAADLP RFDFDTKKKLTLESVREYEGFRVGRPTRGYVWRGKVWGGGSGGGGGVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22430			unknown protein		Lus10021917 [exp]	0	1
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	2.4	0.7989
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	3.7	0.7895
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10020707 [exp]	8.7	0.6943
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10021940 [exp]	11.0	0.7820
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	11.5	0.7820
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	12.5	0.7144
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	17.7	0.7030
AT5G07610			F-box family protein (.1)		Lus10014320 [exp]	17.7	0.6756
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	20.2	0.6797
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	21.5	0.7473

Compare expression of checked genes

Lus10021917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.